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current user: public |
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Query: PF02659.15; MNTP_SHIDS/30-182; Putative manganese efflux pump, from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 | |||||||
# | Score | Template | Links and tools | %id | First | KPKFSEALRTGLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQIL | Last |
1 | -4.740 | PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708; | ali follow.. | 13 | 1 | .......................................................MNEGIPEQLIRRLSDASRLVPLALLAVVAAVIWRPLFHGLIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVA | 100 |
2 | -4.060 | PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7] | ali follow.. | 10 | 1 | ..................................................................................ASYISVPRDLTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAM... | 68 |
3 | -3.760 | PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151; | ali follow.. | 17 | 23 | .....................................SISGLLISCVMLLIGILSFASTFELEDKSS-----------------TVSMALMVFGTGLFLLGIFRLF............................................... | 74 |
4 | -3.550 | HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066; | ali follow.. | 15 | 2 | ...............................................................DEKEVSEMQEEMMTVLVVKHIPNELEDLQQAVGGDIEMTYPFDDEVGI-LLNGNGKFEGLPLNRALYDDHGQVYDAIAGTFLVV...... | 92 |
5 | -3.110 | PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483] | ali follow.. | 15 | 4 | ........................................KFLSFIASFFMVSFVITSCLDDDNNIEYSPDATIHAFALDTAGLGSNEDSLPVHADTIIDKILIKTLTTASGVVTM..................................... | 92 |
6 | -2.870 | HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178; | ali follow.. | 7 | 43 | ..RQKRTHRLCNLGGTIESLAPEFKDLTRTEMTELMEY--------IFSLPEVQRAVRHMAITHINQASRGKEQKADGNI......................................................................... | 112 |
7 | -2.840 | PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF | ali follow.. | 19 | 2 | .................................................................................IVYAIGGLLMAVGTGLYAFFIIQDVACIVMLIGAICFATMQMR-GTNLTIRRLRKIMVLADIGFILAGLFMV | 76 |
8 | -2.740 | HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000; | ali follow.. | 10 | 7 | .....................................................................................VKLSNLTIGYTLPIRNNKYMKSLRVYVSGNNLFCITGY.............................. | 44 |
9 | -2.740 | PB053138 Q73Q90_TREDE/1-298 PB053138; Pfam-B_53138; | ali follow.. | 10 | 125 | ....................................................YQVMATDMLAAGLDYKERAEMLVNYVEALVNIYPSCKAVVFETSKKMLTREDILNCTLPKEMRFLHYAVNIRFFNIQGT---------NDMLVDSLGMSTL | 216 |
10 | -2.660 | PB009534 gi|153852721|ref|ZP_01994158.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814]gi|149754363|gb|EDM64294.1| hypothetical protein DORLON_00140 [Dorea longicatena DSM 13814] | ali follow.. | 9 | 61 | ...............................VLKVIQKIHEIYPEASVENIGETIVTYEEQDGKGGVIHVAKIVMVVMISFFGAAFSTMAFNNDVGVTKMFGQIYELLTGTKSNGFTILEFMYCIGIIIGILT.................... | 164 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5. |