Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF02737.18; Q2YR99_BRUA2/5-183; 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .
# Score Template Links and tools%idFirst TVGIIGAGQMGSGIAHVCALAGYNVLLHDAAPDRLEKGIATINGNMARQVASGKLQEEQRADAMKLIRPANSMEDLAGVDLAIEAATEDETIKRKIFAQLCPVLNPEAILATNTSSISITRLASTTDRPERFIGIHFMNPVPVMKLVELVRGIATEEDTFRKSNDFVTALGKTVTVAEDLast
1 -3.560PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  13  31.........GGSGMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQDYCIEGCYEVEYQNGTVSFLGEGRGVTLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYW----IKTMEL.............................. 190
2 -3.530PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  14  1............................................................................................RADEFGYLFLDRPPYQVLA--SSAITYEEMLR-LHAIEGLLKY-YGNSHLADHAFAYLAATAFDGSYFAIYEALAAWWEAR...... 77
3 -2.170HGC00787 gi|162657578|dbj|BAAX01002027.1|2.0 TMP01033;  ali follow..  12  80...................EFGRPVMFFKAGETKTAQTDGKTEKKLKYFSFTGTVSYVDGDRMVITVPDSAPLLELQQADVGVQLSFDETSYKM-MFDALDRTMK-----AKNNRLAYLRDLFYSHRKAE................................................. 187
4 -2.060PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  9  2............................................TLIKGEPGKGIVLKEYGKNIQKVDWILTIEDREQRTRYANTCVELMEHTTKLWDHLFIMSNFKLDV---DTPYPMPDIAVLGRKPERVLKYKHYG--NINLLIEQAILKEDGAEKEDAIIYLGRLMKRL...... 144
5 -2.000HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  17  117..........................................................................................................TQIAKYNTFLENITDCPMEESKKEQWSAYFFLNLAFYYTDVPMPLKTLSVDEANSISQTPQTEV--YSQVEKD 194
6 -1.970HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  8  2......................................QTNYKRQRMNIFDIAKQNQEKAWQVIKNTNIIQIWEDAGAKINLVGSLRTGLLM---KHRDID------HIYSSPLNLTDSFQAMARLAENPSIKRIECAN........................................ 94
7 -1.950HGC00857 gi|162620543|dbj|BAAW01002606.1|2.0 TMP01139;  ali follow..  11  12...........................................................................................IQQEIYARM---------IMYNFVQMITSHVVIVKKQRKHTYKANFSVATHMCR.................................. 56
8 -1.910PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  10  67................................EKYLKELRECRMMNFKPRARAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLDIREKYYNEFSKILSQKQIM..................................................................... 146
9 -1.830PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  14  35......WGEVGKRVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQNTKIFKGEYNVRIDGPFIPLVRENTDGTLLHDGSVNTEISGTTKVKFEVQPFLNVEFVGNPQVSNGVIK........................................................... 153
10 -1.800PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  9  245.......GWISNITPKEAYELG-------------------IRSSFEYFGVSEYADQYINSTTRNRLGTSVAFDDTVEPTSEVMTYRDGYTNTDQIQEVVYNYPTASKTLYGKAMNDHLTKIIT-----QKYIAQMPYQVLE..................................... 355
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;