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Query: PF02961.14; C3XZ01_BRAFL/2-89; Barrier to autointegration factor, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .
# Score Template Links and tools%idFirst SSTSQKHRDFVGEPMGDKPVTALAGIGGTLGGRLEEEGFDKAYVVLGQFLVLKKNEELFKEWLKSACNANSKQSGDCYTCLKEWCDAFLast
1 -4.890PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  12  6GGPEAHFKRYIKEHVKGKKTGLFITLGESMLKVGRELLNEGGNEILAEFICQGAIDPKVIEEMKE....................... 78
2 -4.850HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  18  56..............IGVKGLAGFLGTSVSTVNRWKACGLDDATLQCGKVVIFELPK--VIEILRVSDKKNKFNVKS............ 116
3 -3.140HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  17  131DGYFEKVAQRISEIMTDEIRETILRLKYETPETEKIIGVEYYQAVIRDGV---RDYSGFKEWRKQ....................... 192
4 -3.000PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  11  10.LDRPPYQVLASSAITYEEMLRLHAIEGLLKYYGNSHLADHAFAYLAATAFDGSYFAIYEAWEARGLLRRGHSQRDLFNHLASFAIH. 99
5 -2.540PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  20  3.......................EGIPEQLIRRLSDASRLVPLALLAVVAAV.................................... 31
6 -2.400PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;  ali follow..  13  1.........MAKIQIKSEQITPFGGIDSTLGPRTKTFGYQYSEIFRSLMCVYFCGGSCVED-LMSHLSFHPVLRSCSADTILRAIKEL 97
7 -2.390HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  10  32.SIDENGKSRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRALQGVLEGTLGVFGE............ 106
8 -2.250PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  14  2................................KTLTFKYLKLFLLAVAMINLTSCEIEIDDFYDDDNIGGSYYNKSLDLCSRPWADTF 57
9 -2.070PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  9  32GRKTKNRRSIIVQKLGKKELIRQLDIAEAN-EQVSDEIIEYFNIQEGDFHTVESCKKVYHRLIISIISEQDNLVDVLFEVFNSF.... 129
10 -2.060HGC00166 gi|163579340|dbj|BABE01005762.1|1.0 TMP00473;  ali follow..  10  109GIGGGDEARLNRIYINRIPTRKHNGILLTTPARCAVFPFPQALPIYDSALRKSLTTIEEVQSLMIQSVCDEVSVTKLLKYANPLSEN. 199
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.