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Query: PF03224.14; VATH_ORYSJ/2-323; V-ATPase subunit H, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DHAELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNILRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLRLLLKGNWFVQEKSCKILTQIISARPKMQNGIVPNGEASNSKSKLTSTQDVLRGLVDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLIPLISPASTQQSIQLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRNLLAKGAFAAQMIDLGLPHIVQNLKAQAWTDEDLLDALNQLEIGLLast
1 -6.050PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  2.......................................................................SILKITEELQNLGNAGKDNRQRVANIVLENKELFEPLLEVTFQVDEPISVKAAWVLEWICTHHQL----------------------SWMIPHLTFFTENLKNLTFD-SAIRPCAKICEHLARDNEFKSKLKNEHIQEIIETGFDWLITPQKIAVRAYTMNTLYLFGLENDWVHP------LKHLIETKIIHESKGTKARGKHILNLIEKHQKS..................................... 193
2 -3.240PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  14  104..MKMPIRYVCEMFIDRVSASKN---QKEKYTDKSALEYYEKSVDHYMIHPDTKAMLEYLLVMLSVKGEEYTYSYIKKEV.................................................................................................................................................................................................................................................. 179
3 -3.220PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  2...ADEFGYLFLDRPPYQ-VLASSAITYEEMLRLHAIEGLLKY--------NSHLADHAFAYLAATAFDGSYFAIYEALAAWWEARG------LLRRGHSQRDLFNHLASFAIHLARGIATRVTVPPL.................................................................................................................................................................................................. 113
4 -3.200HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;  ali follow..  11  2.....................................................................................................................................................................................................................IMNPNILNKNPLMFFDRAVNAQRSQLLTVMADAVSECRTAADQAAELNETGQVGLLRLA-EVWSAIRAKEGMGGLILEGTEAKILSDVVAQFYAGMAIYAELHYMMSSL 120
5 -2.760PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  18  154............................................................................................................................................................................................................................................SAFED-----------IDMAVRTIKKDSSEAEMRHAGKVMTELDGTE--------------LYSRITERLTDEPMSERLAKAMAV. 214
6 -2.640PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  16  154............................................................................................................................................................................................................................................SSFED-----------IDMAVHTIWKESSDEEMRHAGKVMTELDGTE--------------LFTRITERLTDEAMSERLAKAMAV. 214
7 -2.330PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  12  278LFWDKYEKNKLTKTKDWT-Y-------EKEYRIVLNRMDYEIKEEDRKLKYDFNCLKGVIFGIKTPQNKKDEIIEII..................................................................................................................................................................................................................................................... 347
8 -1.800PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  11  1...................................................................................................................................................................................................................................................................................MTHMARKPLGKYRQREIRTVGLMIALYEKRHPETDASTQYNDLFS.. 45
9 -1.660HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;  ali follow..  3.........................MNATDWNLFEKMSDEQDKFRDWLKSQPPE-------EILHHTYEYTVREDIVMAMEQLELTDAQAQALL-----DSPTPLADVYRYFEKLETGHMDVIRDSIENRADDVCRAKEELRTTPIYPHSAAYAREHGELEQ------ASNNVNRQCKESIEAAVREHFDGMYLSHDAAKGVIETYGMERVSMVLSNTVQLQDWDGRYSRRNKEWAKTIPNDNPETVRCGYALPAVLDGFIDLVREEQQRSRTQREKLEPSRPSVRDKLKQE---LPAHKSAAPKKREPE............ 273
10 -1.620PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;  ali follow..  1............................................................................................................................................................................................................................................MAKIQIKSEQITPFGGIFCVMEEFDALLSNIIDSTLGPRTKTFGYQYS-----------EIFRSLMCVYFCGGSCVEDISTHLM.. 73

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.