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Query: PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst VIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQLast
1 -3.990HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  11  12.VLLLICNRELLLIGKRKDEDDMAKSTKTYEERIRALEKKEQESEATKKLIAQRKELEKRKKAEESKKRTHRLCQIGGAVESVLGCPIEEEDLPKLIGFLKRQETNGKFFSKAMQ................ 126
2 -3.510PB002776 gi|157737147|ref|YP_001489830.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]gi|157699001|gb|ABV67161.1| hypothetical protein Abu_0901 [Arcobacter butzleri RM4018]  ali follow..  286..NKLTKTKDWTY--EKEYRIVL--KLKYDFNCLKGVIFGIKTPQNKKDEIIEIIINKCHENNILDFEFYQAFYCKESK--------NIQHKKLDVNIINDLIKKAKQNKLDL.................. 397
3 -3.130PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  12  22VTLKRMPQPVTALLAAMITPAVLISGAG-----TLIMSTSTRVGRATDRVRGLTSRFK------------------QLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRALQAFYTSVALLV...... 123
4 -3.050HGC00762 gi|162641591|dbj|BAAX01018014.1|1.0 TMP00997;  ali follow..  14  5..............................................................................................KVSHQLKKLNNSSSLTKKNMTMEENTVH......... 32
5 -2.710PB000821 Q82P27_STRAW/1-209 PB000821; Pfam-B_821;  ali follow..  12  62..............SGFTEPKYIVVQLSRLLHLVASSVDGSRD---IETIAHRVSGRFGREVSADNVRYLIEQKLDPLGVTVPEGREEEDISAPRSDLLLALKGHRVIFNERRVATIAGALAWLHR..... 177
6 -2.320PB027778 Q5LHJ0_BACFN/1-110 PB027778; Pfam-B_27778;  ali follow..  65..VDIDLEQVVEFIVKEAKK............................................................................................................... 82
7 -2.310PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  76.......EVIGVKIGTDGAVGSYTLDSDGKPTTSTSAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLK-----GVSSKQYSYKENVQLNLEHQLVKFRVKLNGDVPNLSDAKVFFY......... 188
8 -2.160PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;  ali follow..  11  32....FEV-ELEGSDEWPRIDGW--RKEDGSLRVFDGPASGAEAIQRVDRFAATMEAVKPAPTFR------------STHL-------HMDMRDSSMDV-LIKTVLTYMVFEDVFFDH.............. 128
9 -2.150HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  21........................................................................................................DHNETYADQRDRELDSINAFLRNENIK 47
10 -1.930PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  20  21...AVETEEIFPLTEEIENVEWL............................................................................................................ 45

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.