current user: public
If you have questions about the server, please let us know.

Query: PF04826.13; ARMX3_MOUSE/110-363; Armadillo-like, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250
# Score Template Links and tools%idFirst SPNSDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKILNTRDPIVKEKALIVLNNLSVNAENQRRLKVYMNQVCDDTVTSRLNSSVQLAGLRLLTNMTVTNEYQHILANSISDFFRLFSAGNEETKLQVLKLLLNLAENPAMTRELLRAQVPSSLGSLFNKKEYKEVILKLLIIFENINDNFKWEENEPAQNHFSEGSLFFFLKEFQVCADKVLGIESRHDFQVRVKVGLast
1 -11.400PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  10  4..............LKITEELQNLGNAGKDNRQRVA----------NIVLENKELFEPLLEVTFQVDEPISVKAAWVLEWIC--THHQLSWMIPHLTFFTENLKNLTFDSAIRPCAKICEHLANAYYKNEHIQEIIETGFDLITPQKIAVRAYTMNTLYLFGLENDWVH-----PELKHLIETKIIHESKGTKARGKHILNLIEKHQKS............................................. 193
2 -2.670PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  8  224...................................................................................................................GDAARELPDNSWQKHRARELGNLVMNMFDPEDVSTVDKCRKFLQKFFDKYTDDPKV................................................................................... 280
3 -2.620PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  7  136........VTPDDLDNAGNVLFKLNDEEKSLRAALTLHTIRETDLFEIFSSQVENKNVIDSLMGK............................................................................................................................................................................................. 196
4 -2.590PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  11  93........................................DAAAVKAEQVKDSKTVESLGKELKASAPEYEGCVAENAQGLDAAAVKLNEQADW---------YETHEKSLSKAVRAVVESKAAKDDAKTNLTAKLDEASKLLADSDGKVADNA.................................................................................................... 199
5 -2.550PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  8  174..............................................................................................................................................................VEWIESSEHVITLYPAELICTYTYEVRNVKNMEYMTQACGSLSSMAPSMLFANEELDRECVTVPFETELHLESSKMTGKFYTFGHHEENARPHK.. 267
6 -2.290PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]  ali follow..  10  67........LDARFLDFFELLLEANEEINVEENIEYLHELMDYYLKEKIQSRKESYVRNIKITFQKLARVTIRNIINLQHNIDNAFKHEPTYQ--------------------------IAKLQNLDKKRINIQRLIDSTEHLILHEDEELTRILLELRQELQLSAHSLIRAQQ-----DIINYLNQIKNQVILVEKIRKVKYLQDQFELRARSNLSEIMERERSLLLEGNTQASFKSPSYLASDEVRPIILKVI 296
7 -1.900PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  12  159.......................................................................................................................................IDMAVHTIWKESDEEMRHAGKVMTELDGTERITERLTDEAMSERLAKAMAVFVDT................................................................ 218
8 -1.760PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  14  159.......................................................................................................................................IDMAVRTIKKDSEAEMRHAGKVMTELDGTERITERLTDEPMSERLAKAMAVFVDT................................................................ 218
9 -1.720PB092941 Q45777_BACTN/1-139 PB092941; Pfam-B_92941;  ali follow..  11  1.......................................MAKIQIKSEQITPFGGIFCVMEEFDAL-------LSNIIDSTLGPRTKTFGYQYSEIFRSLMCVYFCGGSCVEDISTHLMSHLSFHPVLRSCSADTILRAIKELTVPNITYTSSVSGKSYDFNMADRMNELLRQG................................................................................ 128
10 -1.590HGC00870 gi|163286116|dbj|BABD01024572.1|2.0 TMP01154;  ali follow..  8  1................................................................................MLYTAEIKTHQEGKMKETILLFHAPDKDTLLKIEMALFPLHVRLRRVAKEDYVQPLGALAGV-ETYEGDELSDTLFVFAFFSDNR-----------LNQALAALRKSGAGTFPYKAILTPTNQN---------------NALQCFSEIRREHETIQKQLKGNKEQAEE...... 149
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rychlewski L, Jaroszewski L, Li W, Godzik A. Comparison of sequence profiles. Strategies for structural predictions using sequence information. Protein Sci. 2000 Feb;9(2):232-41.