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Query: PF05283.11; F6ZX51_ORNAN/2-123; Multi-glycosylated core protein 24 (MGC-24), sialomucin, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst ICTGQNCSACLGPSVGNSSCFWLECSGKSYCSDSPSVENCTAENKTEDCSAATTTRPSPTSSSVTTQTTPNATATPVTPSPRKSSFDAASFIGGIVLVLGVQAVVFFLYKFCKSKERNYHTLLast
1 -5.700HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  18  7............................................................................STFAMMGLTFVIGFFVAGVIKLIASAA----SLAFYSSHQEELARL 49
2 -4.330HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  23  85.CGIRQCAL----EKGVATCG--DCLDLERCPT......................................................................................... 110
3 -4.300HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  12  21...VSSCSECSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVI............................... 111
4 -3.220PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  7  13............RSFDHKPIYYDQRRDELEKRIERIRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQSTRSG----LALLIAVCLLSWLVFKVI.......... 113
5 -3.200PB071107 _Gut.Meta.Jp.0066071_ gi|162701604|dbj|BAAY01026246.1||2 (+ 344:749~0 complete)  ali follow..  6  36..................................................................................TEEIENVEWLPGAIVL........................ 51
6 -2.770HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  12  21........................................................................................ANYFSTVVFIFIAVLLLAFIIDLF.......... 44
7 -2.700PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  16  2................................................................ATQAIDATIFASSHPDIAKRTSISGLLISCVMLLIGILSFAS................ 43
8 -2.700PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  19  1......................................................................................SIVYAIGGLLMAVGTGAICFATMQMYLGTNLTIRRL 57
9 -2.550PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  35  7..............................................................................................IVLVLCAAALIYICYNFEKAKKEREQAV 41
10 -2.520HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  20  15.........................................................................................AFLAGAGVSAGVFAFVLVI-RILRCSRIEN... 47
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.