current user: public
If you have questions about the server, please let us know.

Query: PF05721.13; Q92PC6_RHIME/55-292; Phytanoyl-CoA dioxygenase (PhyH), from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .
# Score Template Links and tools%idFirst ARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVLast
1 -2.980PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  6  145GNVLFKLNDADKDEEKSLRAALTLHTIRETDLFEIFSSQVENKNVIDSLMGKYLDGNGN................................................................................................................................................................................... 203
2 -2.820PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  7  163VRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEFEI.............................................................................................................................................................. 242
3 -2.760PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]  ali follow..  6  141..LHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKVRESSYKHEDSIVYKESIEFNDSCVYNDSIAYEYSFAMEYIVCPRI......................................................................................................................................... 249
4 -2.600HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  10  1................................MAKPKNLEQLRAEKEQVETQLAQEQHKLKENRKKYLEKGERQKRTHRLCNLGGTIESELMEYIFSLPEVQRAVRHMATHINQASRGKEQKADGNIPLHRHPDQ....................................................................................................... 120
5 -2.560PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  7  163VHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDF.............................................................................................................................................................. 242
6 -2.440PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  8  38EQMMQMQTNQMVRALMLDDATAAKF----TPIYEKYLKERECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMFSKILSQKQIMKIYQ.................................................................................................................................... 150
7 -2.400PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  11  7..............................................................................................................................................................................GGLLMAVGT-----------------FIIQDVACIVMLIGAICFATMQMRQQ--LGTNLTIRRL 57
8 -2.370HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  8  132............................GAITYAHPLTEREMQELRPSRNNLDIRRQMDAQAQVVGKWEDAHHVPDQKRLTWFYPDFGSYVVKEYVTPDQLAVRVRSIERQEAA-PPIAEQLKAAQREAQGHRG........................................................................................................ 247
9 -2.220PB001934 Q6PSL5_CHLRE/821-1150 PB001934; Pfam-B_1934;  ali follow..  11  74...........................GGRLLRPQAQVMEEAIRHWATVLSVRLDLDAARGKLGPEACEMERQRFDGVIAMMERNDGPT-----VVTDSQAIDVVHPWTLDR----------------------------------------SSGRPLVPITTFSIAMAYQQNGGRLPFVEGLEALE----------------------TLQDGDRVLISEACNHNRITSACNDIGMV 219
10 -2.180PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  10  10.....................................................................................................................................................................KVLEYCPAPGQFTNKLPEINNTMSAEERLKACEEQLEDGNLVCLGAAGGYITVLDQPIKNGKGSD........ 75
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.