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Query: PF06933.11; O44418_CHIPA/1-756; Special lobe-specific silk protein SSP160, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNIKVILVCALVAIFFAQVAEGGPIANFVGFVISLLFSLFEVMVSVVFDVKSFTSLSTPTCNSTVPSFATRVGGGRFSGIITASFNMIAMISANVQAIQSGSGSTSGSSSSSTTSTSNSTTTTSNSTTTTTNSTTSSNSTSSGLTSSASVVSLIDTIAWVYQDSSVGIAYLMVSILALFYGQSVSAPPYPDLGIPALPANCSGPGVPQSVQIRAAIAYVNITIYFINMTGQQFEDLQGPVATDCGCPNTTSVAPLVLEWEAILAALQALANSTASANSTTSSNSTTTTTTNSTSTTTTNSTTTTNSTSSSNSSTIAGCIDISANFTIALQSLQALLLQESTCAPALAANAKKSGVRDMSPCKPGKTASGCAKSGEKKVKRKARLEKMRAKCRRAVGNRMKGSMKKRVRSRAKKFGEAAKSGVRRYRKNIKYVYIPPVMASLNAYAALMASLSESISSQSDSALNSTDQACNSTGSNTDAAVIAATNNVTDMFANFTAMVLNNTVAYPNCTQFADMALLMISQINDQIISCGSQSDDAESSIYFNVTINIVAMAQEYNNFASMSDKCTRSFANSWLWMYIKWVFYRMGMTSGIPNFLACQTKAESSLTALLASFNATINATIAAASANSSSVQSSEASCIESSLSDASAILAMYENAYQNCVAPGSVPDAANTTTTSTTTTTTTTTTAAPTTTTTKAANAPFTYPLCNLQMTAACVAGLPTCTYPFISSAGCCPSGKTLNTGLGGRGCCKLast
1 -5.850PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  23  106.NISNKLVAAIVAQSSIGAKAGSDLAAVMAIGGAATMHLLSLLIFVG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 155
2 -4.420HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  1MKLLLAMIAVAALISFAACDHNETYADQRDRELDSINALRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYVLFESN-----------QVINDGCGDYIAKGKTQNVLCRFTEYCLANRAKICDDAITLTNDVPA--TDEISVKNTSGTFEGYFVDIKKSLLANTYNSSYYGTVSA-TVPSGWLIPFTWIKVGRLITADDELAHVRLLVPHTYGTTSASAS......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 224
3 -4.180PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  5LNLYCTIL-------------------LCIMSAVILYSFYAVSKDMVSGFTAGVRSADIEAK-------------------IRNDKNYANSEEYKKLMQERDESEAWARAATISFKADLNAEPATFVNQKTGKPAKVWIRTADVNYQSPRY...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 117
4 -4.060HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  30  70.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCG-----ALEKGVATCCL 103
5 -3.420PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  1MKIKFLFIASFFMVSFVITSCLDDDNNIEYSPDATIFALDTAGLGSYADTIIDKILIKTLTTASGVVTMKDKSGNDSVININDSIDLREPLTIKVWSTEALAGISPNQTKEYTIKVNVHQHDPDSLRWNHVGKMQDEIIGEQKTIEFNNKILTYSVVEGKNLKVYQNSNYSNWTAAGTNTTGDLTSTLPNSILPLNGIILATANNSTDGVAWTISDKFSGNVKTFISKIPVDTDTKITYIKTEDGKQYIYSILESELGAADSEKKIEEADKEFPVDNISYTTFSKGSSYYRNIIVGKHEPAIEIDINNKKVPITIAWGYDGNV.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 350
6 -3.190PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  10  1MNI-ALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQTVEIRCELKKTGDFANTLYTIRYFQFEGE----GTLKMDNGITFLPNDRYLLENEKFRLY---TAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVKDDGVITVVPIGNFKPLT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 167
7 -3.020HGC00267 gi|163310129|dbj|BABD01000566.1|6.0 TMP00066;  ali follow..  1MDMTVLVVEPMKAPYVKHIPNEEDLQQAVGGDIEMTYPFDDEVGILLNG---NGKFEGLPLNRALTFLVVGLTEDDFTSLTPEQIEKFKEKYQSPEIFTLFNGELHVMKMPPEEEKEQKESRKNDAKQKNPAKKKNRSGDA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 163
8 -3.020PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  121.TLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYS..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 207
9 -2.960PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  10  1MKVLMALFLGSQMTLSAQNEENKE--RKQRPTPEQMMQMQTNQMVRALMLDDATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 59
10 -2.920PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  1MKRNYFFTMLAAVLLAVAGANAQESAEFRPAELAGIWQLCHYVSEIPDVPGILKPSNTFKV----------SDDGRIVNFTMIPGKDAIITGYGTYQQLTDNSYKESIEKNIHLPMLDHKDNILEFEIGDDGVMYLKYFIAKDLNGNEL........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 140

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.