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Query: PF07476.11; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst CVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFQGEKLREYVRWLSDRILSLRTSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRLLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLVKPGMGFDEGLNIVFNEMNRTIALLQLast
1 -3.790PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  13  1...................................................................................................MNKTVNINLANMLFHIDENAYQKLLRYLEAVKRSFAGTAGSDEIIAD------------IEARIAELFYEKMENERQVITQKEVDAVIAIMG.......................................................... 80
2 -3.320PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  8  12.......................................................................................................................FSDMKSDSPDLKTAMLGR---IRADEPRKVWTPSDFVDLASRDAVDKTLQRLTKAEALRRIDRIDAVGRRDQTRMLVDGMTAANDLGLTDAVPAKIVV................................ 129
3 -2.790HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  7  33..........................................................................................NARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRLSMDCGYQMKQSITGRSYSRHL------YIQTAEVSIYGTENLKL.................................. 162
4 -2.770PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  9  37.................................DNYSEIELGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITIDENL-------------------------FPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSE-DQLEIKISGSSDV----KFPHNVKLRLGEFSVSGSNLTSKVSGSGDITLKGKADEARY........................... 206
5 -2.550HGC00573 gi|163306732|dbj|BABD01003960.1|2.0 TMP00669;  ali follow..  8  1...................................................................................................MAQQKNEVQSLLEKAMFQATVADFWMAGLELGVIKTNQPKEVCSGIPQFIIGVKGLAGFLGTSVSTVNRWK--ACGLLDDAT.................................................................... 85
6 -2.520PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  8  47.....................KELPQVVKSTLSKDYEGTIVK-EAFVAEKENGKVYKIIVTAIKEDQSTEEITVLLNEKGEP....................................................................................................................................................................... 106
7 -2.450HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  4  1............................................................................................................MAVSAPPILKTLKTKDMIAKTILQQIGGKRFTAMTGSRDFIDMGNGLRDIIYDEGADLYNMRFYRRTFSKKTFKTKDIAVHEGIYFDMLEEMFTMVTGLYTRF...................................... 118
8 -1.920HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  8  110CSASDVTLQLSAASQSVPVGGSLDFT---TIVHEGSGNYLVDGSDSGRVLT--ITSGQETIYKSDVCPADSRLLLMAKGDKDVQKVTWNTNANATLAKCTDESGWAKVN-----------AGTYVAQLSLKDHPKVKSDPVTFTVQ....................................................................................................... 240
9 -1.860PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  11  21...................................YSSIMGPINFEKAKKERE-QAVIARLIDIRKA---QQEYRSLHHGMYTE----HFDTLIDFVKNVMKVGQLTDDQLESGLTEKKAMAIINKAKKTGKYDEVKKNGLENFKRDTMWV--AVMDTIYPKGFNADSMKIPYGNGAIFEMNVKNDTAKSGAPVYL..................................................... 177
10 -1.680PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  14  234......................KVLESIDEYYNEG-KTQGICVFG------GYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKA.................................................................................................................................... 322
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;