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Query: PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMGLast
1 -2.830PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  7  76...........GYIFDNPFAKVMRLWGAEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMDDLEEEYLDIEEEVTALVASYVDDHLELF.. 161
2 -2.700HGC00789 gi|163310627|dbj|BABD01000073.1|7.0 TMP01036;  ali follow..  4  91.....................................................................KDIAVHEGIYFDMLEEMFTMVTG 113
3 -2.620HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  8  74....TEAEFDSSMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRENKPAVSLPGDTVD.............................. 131
4 -2.600PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  22  69...........................DDFMENVKPNLKSTLCRMKDAGDFDKVTILKPYSFVLVDEDKETVAELLDELLKGLDKELDEF.. 141
5 -2.430PB012472 gi|62259485|gb|AAX77857.1| unknown protein [synthetic construct]  ali follow..  12  258QNNSLKKEHKKAINFSDKA--NLNMQIQVNRKSIEDLENKL................................................... 296
6 -2.390PB034679 gi|150005530|ref|YP_001300274.1| hypothetical protein BVU_3014 [Bacteroides vulgatus ATCC 8482]gi|149933954|gb|ABR40652.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]  ali follow..  17  112..........RKESYVRNIKITFQKLARVTIRNIINLQHNIDNAFKHEPTYQIKIAKLQNLDKKRINIQRLIDSTEHLILHEERDFFRQAT. 192
7 -2.200PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  15  49..VRALMLDDATAAKFTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQFAQSRKMLDIREKYYNEFS. 137
8 -2.170HGC00993 gi|163626727|dbj|BABG01009540.1|1.0 TMP01352;  ali follow..  10  25.VIKLIASAADSLAFYSSHQEELARL--KRIRKLHQKVATLITESALSDE-------------------EYGSDGREDFSRGVTKHPGDNRG 94
9 -2.140HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574;  ali follow..  15  54KPVKKTLSIPGWLN--ESAHINFSSVLQKGLKSELGMI...................................................... 92
10 -1.930PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2]  ali follow..  23  243.......................................................................VADLLAPDLNQKLGNIDRAAG 263
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.