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Query: PF08626.11; C0NZX0_AJECG/5-1447; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PLSPVAPARLRALLLPVGNIKRSRFLNLVKRLQDQNVVRLGDVSPDCRPNRNAFSPMAFPTGMIVYDLSISVPPISHLDLYPFEIFREPLVIIAIADGTELPGPPEGTGTYSQTQSNGTKPCNYPTVEGLQLLQQELNTLKDSHPKSLVQQLLVFDYAAVSKLVTGPDTVIWVPRPEAARSTTVKTVMCDITSRLLGELSGLAERIQEWPTVESPKASSWGPRRKPEVRPPVSEKLQHRMTMPAQLPGANGTFVDASDTNFQPAEHDSPTTFDEITRSIQVSNRVTSSIKASSKPGSKEHSRERMSAQGLGFVAASERSKSRVKGRLNIVMGTLFLQAGRWPDSLKELAEGATIARANSDYIWHAKALESILQCLLMLGWAGMDFRIPQICYPTADKFSKSVSQTPSLSHTELYSIGQSNPENRRVSLQNLANLLPDLANNILNLYTRAANITDEPVPQLVFSETVIRLARILATVYIRDGSLDDSALGNIVMNDSLKFVRSQERPRGTVSLRKSDIASFLFRALPASLGTDVPITDSTPILVGMASVLSSLGLDRKNAFVLQLLFSILIPGLVQARKIGAAEVGIHPAAGLSALNYSAFEMNALDAGPGNMEESIRILLALVGKIYGVPGIMICTDNRRDLSRHNSTAKSETVPEYDSVDSIVDRAFRHSVMNGFGDHTLKVEILKACINLCEALPDFQGVLQFTVDLLQTVKGTLMLLPDSYLGLPVIPLQEQVRLFNNVKRTVAAAKKLGDSNLEAEYWDDFMVRGVELVNSSDFKSPVRRSRTDFGFANVEERLEKKNPFIYSTFSKATTKRSEDLLIAEEPATFKVTLQNPFEFDVEIESLRIDGTGIPFEAAATHGLWLAPFTTQEYYISGVAATEGTLEIRGCTVKVKFCRERIFPIFKNFWKPQKEQKIKRTGLAAKEPFSERPLSWSSNASRSRLGASRKGPEPDIVLIKVIQKQPTVIIHSTSLSQSAIMLLEGETRSFDITLQNISTCPLDFISFSFEDSSTPQLQSALNNKENLPTDMYELELRLSTNPAMTWRRDKLHDYELSIAPGETATFTIDIYGKPGLDNAILKIDYANVCTSLADLPETFYCRQISLPLTVTVNAGVDVTRCDVLPFTSDFAWDNNKLQQSEDSRTSLGDKEAIKSMESSSTPRSITQFREAQFSQTFSRIGLSSFGFGHCLLLLDLRNAWPNPLTVSLFVNENISDGAKSPDDKLKHNPVGIHEIFDELQPGHISRFLLVVPRVYIENAQKPIPSLNVSNKRQFVVSANKLDYEAESSARECFWFREELLKHLRGSWKDVATGRGGVIDLRAIRLNARMVDALRIDDADVTFSLRPYTGDSSNDKTIENGIDSVSQTGHSKFTVKTNTFLTLSATIINRSSKPIHPLLRLQPSLRHTPHAIALDLSKRLAWSGMLQRALPILEPHQTTEVTLGVLast
1 -5.170HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  13  80........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AVNSMIHHDEVYAISRDATPAPKKVSNVKDCSASDVTLQLSAASQSVPV--------------GGSLDFTATIVHEGSGNYL-VDGS--------------------DSGRVLTITSGQETIYKSDVCPADSRLLLMAKGDKDVQKVTWNTNANATLAK-----CTDESGWAKVNAGTYVAQLSLPVTFTVQ........................................................................................................................................................................................................................................................................................................................................... 240
2 -4.690PB014120 _Gut.Meta.Jp.0147711_ gi|163636126|dbj|BABG01000147.1||5 (+ 2345:3428~0 complete)  ali follow..  1.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SISAQEKKELDSQTIYVSFDKTKHIVLPAQVSDISYGREDYVKVERVDNVPNVVRITAQE-GTTNLIIVCTNGNVYSYKISYLLPGMTDHCGNIVYAGDVDRSRCYNVIVNNNNTTEMFFTTFDAFEPSNLFVIDKDLNTYEITLFKDNALTYSYNFDDGRKYIAHIDVNSIEMDNLINKLHYKKRNIFSLGVIKKDDFMFFVFDIKNFSNIDYDVDF---RDQKKVKNSIQQEVPYDPVEQKDFDKKILGKSQNRFVLAFNKFTIPDDKVEIEMFERGGGRHMKLS....................................................................................................................................................................... 332
3 -4.520PB012954 Q5LF97_BACFN/1-383 PB012954; Pfam-B_12954;  ali follow..  12  256................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................DGDVLLLRMTLTNRTQIGYTTDF---QDAKIRKKTAVQQLEQNILFTFDYPEEIPAHESRTFTVAMNKFTIPDKKRKLKNKSLLTAEEVFRSRKQQETEDEA---------DKILRRIA............................................................................................................................................ 383
4 -4.440PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217]  ali follow..  22......................................................................................................................................TQLRTVVEEFPFFQAARALHLKGLKNEDSFLYNTYLKKTAAHTQD-----RTVLFDFITSEIFNQTAISAQIKAQEDHLRNMPVHEFVDVSSEMEAEELQKANRVLDPEFFVRKEASEETQPEEQLQLGKPLDFNKAETHSFSEWLKLTAFNKIDRSKEVKETISASAKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVYVEQKNFSKAKQAYRI---SLKYPEKSGFFADQIRAI................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 307
5 -4.290PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  1..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MTMQGDAQCVRGNRNTAWPLAARLFPAMFALLMLV------IAGTGSAAAQPSPWTARPFGDRLVGWDT----YRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHEVDSIWLTRDGGNLRAIGNIRVEDGQRRSMRISVESHLE----YYHVDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTI-AESTGPASISALRLYL----------PAPADQSLTGLRLRIEFDGRTTVDSPLGEFMPFARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASTARSHAGPTILGQDWPFADEQGRGKFVGVSQTIRGQRTRT-AERVYTDGAASPQWYGTGTEDLYEGGWYFKDGTHFSTAGCADYCVAVYRIMPAE---AIG----HSALRFGIEHGKRNMVEPDYSSTAFLYTQP.................................................................................................................................................. 543
6 -4.210HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  11  51..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TQEIQGQPEISVNIDSETGAPQAYATFNVKVTNTGKVP-TSVQIYGQAPYTE------GGLEKVAIQLLNFE------------------KSSELAPGASEIVSVKV-------DLQYIASYDMEHDNGDGTTGTYVLDPGTYYFAA.............................................................................................................................................................................................................................................................................................................................................. 167
7 -3.700PB001823 Q5L7Q9_BACFN/1-326 PB001823; Pfam-B_1823;  ali follow..  87.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NISYTILDEGSETTYAKVWQAIMFEDTQNGDYDYNDLIIHVKNTASNHAYQHPTE------TWQTIEIQPIALGSTKTIKLGCILSDGSTHMISDDVRTDLFGGRQGF----INTVNDNDPIRYKLASTNIKNYAMPKKEKTSAAWVAWFIEVDGKRMYAASSDIDYKSYDMVNKENMPYGLAVSNGNG-PQEKNSLF---ETYPGFSDWINGKVSSIGSFQK........................................................................................................................................................................................................................................................................................................................................................................................................................... 299
8 -3.210HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305;  ali follow..  13  33.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IDENGKSRHSVWLSDDVWQEVDAFYKLDNCPIRNEFAEKALRQYCGRLHAERTGAYLPRALQGVLE-----------GTLGVFGERLGRLLLKLA---EHNMTNHLLGGDMDMTRDEYSKMRGSSVREVSATHGTISFKDVMVFY............................................................. 164
9 -2.840PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  11  83...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLE---------QLVKFRVKLNG--------------DVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAM---LAPDTNFVKIEVYGLTNPDIELVKGTVYTYTVNKVDIPYEIIDNNGNSVSGFENIS............................................................................................................................................................................................................................................................................................................................................................................................................................................ 284
10 -2.640HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  17  50..................VYPEEEIKKLVESLEDKDKVYIKILTYEFEDEYVSFR--IFSQGEWKVKLVTE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 100

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.