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Query: PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SLRVQVAKSFFIMTFLGSFLCWVAFISSGLGLSLIFTLSLVFSQIYPAQNIAISASSRVFEPLRYLPVRFSERMLVVFFIDSINILAFATPTIAVLMVKNLYFGLYSLLWIIAAILLGYSMVFLYYALFGVKVRSGFSKSVLAGILFFAVLVFALRRFQEIPDLTPYLTPHLLLLSYAASSATIKLSTGRVWRSILNPEIVEVKGSSRLSSGSPLRAMLIKDFRLILRKNALFPLIVPLVIVMPNVVSIANMPNLSIFIITTISTLSTIDLRIIGNLENVDFLRMLPLSKRGFVMSKACLIFVISFAASLPAGSIAFIVSQNPFYLFMAFAIPAIVSMLSSLIIFWQKGEEIYFPEVGFLKWIGLLLVNFGAVYAVLSPRFILSQPVADIISSVLTLLAMTALFEKLast
1 -3.210PB008694 Q9F6U1_BACTN/1-190 PB008694; Pfam-B_8694;  ali follow..  9  27............................................................................................................................................................................................RRSWAATSKPPSGNLPKSGETRTIKNEFINEKRKMRMNLPKVKMLQVSKCLIGLAVMMLQSCDVADNLRDMLCGNWESVEGKPDVLIYKEGEAYKVTV........................................................................................................................ 127
2 -2.870PB012386 gi|82541244|ref|XP_724876.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii str. 17XNL]gi|23479680|gb|EAA16441.1| blood-stage membrane protein Ag-1 [Plasmodium yoelii yoelii]  ali follow..  20  1..........................................................................................................................................................................................................................................................................................................................................................................FDIYIFNIGTVFSFVSKYYICNKAVQDISEDLIKIVSINKIFN. 55
3 -2.290HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  12  97.VTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIYAICSQLFK-IRPLPTQARWILLALWLISFILCGVYIHQSGMLYDWHNYWNGVHNAVWL....................................................................................................................................................................................................................................................................................................... 209
4 -2.220PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  6  98.......................................................................................................................................................................................................................................................................................................GKPAKVWIRTADVNYQSPRYFIAVKSLCYFVMVVLLITVLVLSFKLIARFRNSENIFLMRNLKLIRIMAFSILAYYIIWWGIT--LVEVYFIQQSFSEIPFIFIIYEIFAI 225
5 -2.200HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  15  50..............................................................................................................................................................................................................................................................................................................................................................................LCNLGGTIESLAPKDLTRTEMTELMEYIFSLPEVQRAVRH 91
6 -2.150PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7]  ali follow..  8  16KVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQ........................................................................................................................................................................................................................................................................................................................................................... 74
7 -1.940PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  10  1......................................................MNEGIPEQLRRLS-DASRLVPLALLAVVAAVIYVWRPLFHGLIYRVAYSPSLLILVGTTVVAGIALVFWPRMGEDPLESAVTKWSILGTIVVAALVLSVAYSIPAGMAEERSLAQDATADAEAVTDFPTVNEENPRIVPEAVANVQTKGSVSYRQHELGASDIARTEDGRLAW................................................................................................................................................................................... 173
8 -1.910PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  8  7.............................................................................................................................................................................................................................................................................QKVISLSIQGVKITASVLKAAVRKFLEMDNRRKQKATQVKMAEKTGRAQ--EKGREKARKKIEKKKPHGKQTIKQLNAQGVQLSNIKIT-IKSFDRVARKYGIDYSLKKEV---DPPKYLVFFKAKDVDVMTAAFRE 142
9 -1.670PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)  ali follow..  11  28................................................................................................................................................................................................................................................................................VNLSNKLYGACTLTTLPDI---FRKKLGMYIAAYLEDQI----------SELGLWQSFTAEHKRLYGKYLPFYNYVADEINEEDIRFIIWNTWQKAASLHEKTYINPNEHAIKEQAGIFYGILE.......... 142
10 -1.630PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  21  4................................................................................................................................................................................................................................................................................................................................................................................EFGYLFLDRPPYQVLASSAIT-YEEMLRLHAIEGLLKY 40
FFAS is supported by the NIH grant R01-GM087218-01
1 4 4 8 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.