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Query: PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPVTLSFGNRHNYEINHSRLARLMSPDKEEALYMGVWDRFKDCFRTHKKQEVLEVLYTLIHGCERENQAELNVDITGMEKIHAFTQLKEYANPSQQDRFVMRFDMNQTQVLFEIDGKVIDKCNLHRLLNVSENCIFKVMEEDEEELFLKICIKYGEKISRYPELLEGFANKLKDAVNEDDDVKDEVYKLMRSGEDRKMECVEWNGTLTEEEKNKLRCLQMGSFNITTQFFKIGYWELEGEVLFDMVHPTLSYLLQAYKPSLSSDLIETNTMLFSDVLNKDYDDYQNNKREIDAILRRIYRSHNNTLFISEKSSCRNMLILast
1 -3.700PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  12  82................NARLASIKSKSERRKYTKIVQKYIEEQFAAELKKLTRQILVKLIHRQTGVTTFQLIKNLRSGWRAFWYDTTAGLFDIELKSEYNPVNNREDFLIEDIL............................................................................................................................................................................................................. 182
2 -3.280PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  15  132..........VSRVVTPDDLDNAGNDEEKSLRAALTLHTIRDLF--SSQVENKNVIDSLMGKYLDGNGNPLSVRKTKSVVPVSD-GWKQY..................................................................................................................................................................................................................................... 223
3 -3.210PB047024 _Gut.Meta.Jp.0098985_ gi|162869273|dbj|BABB01000734.1||6 (+ 5047:5650~0 complete)  ali follow..  100........................KMEGMKMPIRYVCEMFIDRVSASKNYQKEKYTDKSALEYYEKSVDHYMIHPDTKAMLEYL--LVMLSVKGEEYTYSY.......................................................................................................................................................................................................................... 174
4 -3.090HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;  ali follow..  10  13.................ERIRDIRASEKR------VYRKVKEIFALSSKSQVAQSFFKSVQNKLEYAATGHTAPELIAKRADASKDNMGLTS................................................................................................................................................................................................................................... 85
5 -2.990HGC00429 gi|162734516|dbj|BAAZ01029480.1|1.0 TMP00411;  ali follow..  2LKENQGYVIRRTILFDNQC---ALGENSRAPNPFVTWDGHRDYFWGNEPDMAERDLLNRARDYQRRYHVEEVEQAPDKETYLYYSTQRPID.................................................................................................................................................................................................................................... 99
6 -2.910PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  150..........QASGSSFEDIDMAVHSDEEMRHAGKVMTELDELF-EAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEF-DFR....................................................................................................................................................................................................................................... 243
7 -2.890PB008806 Q5L9W8_BACFN/1-127 PB008806; Pfam-B_8806;  ali follow..  11  44...........ILQQTMSITQIRIKPTDKNKLFLNI--NVSDWFK-EQLNKLNQSVRMKQRQKIVRVQSSNDSILLDFSKKVKFNAALNLA.................................................................................................................................................................................................................................... 123
8 -2.790PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  150..........QASGSAFEDIDMAVRSEAEMRHAGKVMTELDELY-EPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEF-EIRNN..................................................................................................................................................................................................................................... 245
9 -2.790PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  11  1MHIDFALPSNGTYN-SSRQLANYLEHEDLERMEKG--LYTDSFFNLTENNKVIKDIYAIHVSPSEKELQAMGNTEHEQAE-SMKRYIREVFIPEYAKNFNKGLSEADIKFYGKIHFN.......................................................................................................................................................................................................... 134
10 -2.450PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  79.QLNAQGVQLSNIKITDENIKSFDRVARKYGIDYSL---KKEFFKAKDVDVMTAAFREYAGVELKKKQVKKPSVRKKLQK............................................................................................................................................................................................................................................... 164

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35