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Query: PF11799.8; B6QQ86_TALMQ/339-497; impB/mucB/samB family C-terminal domain, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst VMEARAVPTQISIEDSYRGLEHFEDVRKQLQLLSTSLIKRMRTDLIDEEVHKDTNQEDGTRWIAHPRTLRLSTRRRSPKNADGSRDYSYANGRTSRSGPVPKYMFSLAESAEAVAEKLVDDCLVSMFRKLHPDKAFGELSLINVAVTNMVETAGDNKQSLast
1 -5.000PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  15  12.......PRSFDHKPIY-----YDQRRDEL----EKRIERIRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQSTRSGRTLRT........................................................... 95
2 -4.220PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  12  100.......PYSFVVDEDKETVAELLLIDDDTLLVDDELLKGLDKELDE................................................................................................................ 140
3 -3.590HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  7  11MKEEDNILKKVGKKNSFK--------EGYFENLTSEVMGKLPEK................................................................................................................... 48
4 -2.970PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  11  89MAEAEGVNEEMKGNEQMAWVQRMEMICGRVEEVVCE........................................................................................................................... 124
5 -2.940PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  6  8............LDAMFAPYPASTRLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGAASL................................. 121
6 -2.510PB177066 Q891G9_CLOTE/1-159 PB177066; Pfam-B_177066;  ali follow..  8  6LKEVKLLMNDTQKNDLFYVCCLIEFIGRKTKNRRSIIVQKLGKKELI--------------------------RQLDIAEANHCLSFEQVSDEIIEYFNIQEGDFHTVESCKYNVPSVIGKVYHRLIISIISEQDNLVDVLFEVFNSFISDEISDFNSS 140
7 -2.320PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  17  205.......PHYTRQDSIYMDL--HDELRAAVDQFDASQPTFGGADLFFNGSIE--------QWKRFANSL.......................................................................................... 256
8 -2.250PB034180 _Gut.Meta.Jp.0112129_ gi|163310377|dbj|BABD01000320.1||2 (+ 509:1679~0 complete)  ali follow..  11  4........LQIYTNDKIHPYTAVQPSDSYFVNLSNKLYGACTLTTLPDIFRKK--------------GMYIAAYLEDQISELGLWQSFTAEHKRLYGKYLPFYPTNSNYVADEINEEDIRFIIWNTWQKAASLHEKTYINPNEHAIKEQAG........ 135
9 -2.180PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  14  257AVDSDGNPKHLDHADFIRIQSGVLQQCGWTGETSTEVGR---TN................................................................................................................... 298
10 -2.160PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  22  30.IRADEPRKVWTPSD-FVDLASRDAVDKTLQRLTKAALRRIDRGL.................................................................................................................. 73
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.