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Query: PF12574.8; A0A0F3MK43_9RICK/404-636; 120 KDa Rickettsia surface antigen, from PfamA32U

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ILEDESFKKWQEQNQNKTLDDFKHSAAQMDNLTPETKELISKLGAAGYANILGSGANIEQAQEMSFAASFCTLDWATQSNAVGNTTRKTITNEAGEKVVDLVSHSHSVQLSASVNGATKTITKCRTIDIPSTVEKGPLDLALVAQDSTGKNMPESKAVYFTVHYDQDGKIVEMTHPEPLKFFSETPSSPAYTVINGEIFTLPITKEKYEQLHKEISQNMEEQYAKDHQLAADKLast
1 -4.950PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  13  20................................NMKGQSLKDILNSSAVKNAVTSVTGGKAVTFENLQG-----TWMYVNPALQLEGDNALKNVAGSLAATEAEKKMKEYCAIVEGVFNYVFNS-----------DSTFTSALKRGSLKGTYSVSPEDKTVTLRYTVGNKKLTVS------------TLTAHVVLSGNELTLLFNADKLLKFLSTVSSISSNT........... 184
2 -2.760HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  10  149................................................................................NTSGTFEGYFVDIKKSLLANTYNSSYYGTVSATVPSGWLIPFTWIKVGRLITADDELAHVRLLVPHTYGTTSASASACLYDIRFQAA.................................................................. 237
3 -2.620HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  8  51...................................................................................................RVVNDTLDSLTITAFGTDSIILNN-HGLSLPLRYTADSTVLVFHYSKDVKIKKDT-----IVIRQKNTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAEVSIYGTENL--KLFYRN.............. 166
4 -2.560PB048420 Q64S71_BACFR/1-165 PB048420; Pfam-B_48420;  ali follow..  11  1.........................................................................................................................................MEIQFVIVRSENAE-------YL---HNVNGTYVDVSDPSTEFVSGEDDFRLVDPDSSLTRKEYEFRGERF-YLMPQFYGNGWLALTLQSVEDET. 85
5 -2.550PB007147 Q11UU2_CYTH3/1-245 PB007147; Pfam-B_7147;  ali follow..  11  6..................................................................................GEPGKGIVLKEYGKNIQKIVDWILTIEDREQRTRYANTCVELMRQLNPGVRDTEEHTTKL-------------DHLFIMSNFKLD-----VDTPYPMPDIAVLGRKPERVPYNHNKLKYKHYGKNINLLIEQA.................. 121
6 -2.530HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  27  27......................................................................................................................................................................................................FKVP--EGYFENLTSEVMGK............... 44
7 -2.480PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete)  ali follow..  8  23............................................VEGNGNIITKEISVDNYSEIELGGNIEYSGNNFWGNRSNKKFPVFYTHGRSASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRI----KPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGS----DLVFADLDCKNLTSKVSGSGDITLKGKADE.. 203
8 -2.380PB019827 gi|67919427|ref|ZP_00513005.1| conserved hypothetical protein [Chlorobium limicola DSM 245]gi|67782966|gb|EAM42367.1| conserved hypothetical protein [Chlorobium limicola DSM 245]  ali follow..  15  2..............................................SVSWIAGAEYQLFKKVNLLLAVRDYAEGYYSPFAGAFAERGDGGSNERGVYLGIDAALSSKVSVGAYYDWFRFPKLDSKDYPYPSSGYDTRFFLDW----------KQSRAVTWTLQLQHKEKEVALK........................................................... 119
9 -2.280PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  9  31..............................................................................................................SETIWGEVVDEATGKRVLTDQGSEGIRVRLT-------ELSWGDNVQHNPDFYCMMDGTFQNTKIFK------------------GE-YNVRIDGPFIPLVRENTDGTLLHDGSVNTEISGTT 127
10 -2.270PB012954 Q5LF97_BACFN/1-383 PB012954; Pfam-B_12954;  ali follow..  11  266.........................................................................................LTNRTQYTTDFMRFYIQDAKIRKKTAVQQLEQNILFTFDYPEEIPAHESRTFTVAMNK---TIPDKKRLIIEIQERNGGRHFLYKLKNKSLLTAEE----------FRSRKQQETEDEADKILRRIA................. 383
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 9 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;