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current user: public |
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Query: PF15919.5; E1VAV2_HALED/3-129; HicB_like antitoxin of bacterial toxin-antitoxin system, from PfamA32U |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . | |||||||
# | Score | Template | Links and tools | %id | First | YPIAIEIADEQHAYSVVVPDLPGCFSAGDTFDEAVANAREAIEGHLESLSDHGDPIPKTTTIEQHLENPDYKGWVWATVEVDITPYLGKSHKINVTLPELLIKRIDTAVAKQGDVYQSRSGFLSRAA | Last |
1 | -32.800 | HGC00518 gi|162728471|dbj|BAAY01000490.1|2.0 TMP00574; | ali follow.. | 21 | 1 | ..............................MDEAVAMAQDAIGLML----EDCEVCPKPSLPSAIHVDTG-DFIAMIPFDMEEYQKQFKPVKKTLSIPGWL----NDAAESAHIN---FSSVLQKGL | 85 |
2 | -7.100 | HGC00962 gi|162759780|dbj|BAAZ01005693.1|3.0 TMP01305; | ali follow.. | 15 | 35 | ......................................................................................ENGKSRHSVWLSDDVWQEVDAFYKLDNCP--IRNEFAEKAL | 73 |
3 | -4.070 | PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815; | ali follow.. | 9 | 352 | .........TIDNYAFIVPQASDLLTEGKALSHCVGGSN-----YIKQHIEGKTTI--------FVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQN...... | 452 |
4 | -3.690 | PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759] | ali follow.. | 14 | 170 | ..TEIIRRNDIQSVTIVRMEVPCCGGLEMAAKKALQDSGKFIPWQVATISIDGRIL....................................................................... | 223 |
5 | -3.360 | PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904; | ali follow.. | 11 | 73 | .......HKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFL-TLGKLGKAIQNNPQ------------------IVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAERSKTLWAL. | 173 |
6 | -3.180 | HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455; | ali follow.. | 14 | 17 | ....................FAAC-DHNETYADQRDRELDSINAFLRN............................................................................... | 43 |
7 | -2.970 | PB008434 gi|121582878|ref|YP_973320.1| hypothetical protein Pnap_4296 [Polaromonas naphthalenivorans CJ2]gi|120596140|gb|ABM39578.1| conserved hypothetical protein [Polaromonas naphthalenivorans CJ2] | ali follow.. | 13 | 151 | ......PDKETKLYQAPFFNVQGKVCTGNAAMPVGDNAAI-PHMWVDAFFGSNFTHPNFKEKDRLVKGVCPIDFWKAMTEKPLPVFPEGRVDLPLTVADLLAPDLNQKLGN-----------IDRAA | 262 |
8 | -2.690 | PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501] | ali follow.. | 12 | 17 | .........DENAYQKYLEAVKRSFAGTAGSDEIIADIEARIAELFYEKMENERQVITQKEVDAVIA............................................................ | 77 |
9 | -2.670 | PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986] | ali follow.. | 6 | 180 | ..ANSSYDEQAGKFTVE-KARSNEKLNREHVIKYAELELASLAETVDLSKLGNDAYEPLNGTLTDDQIQAACNAANNFLGVNVTKVDGSSVLQWISFADPANPTLDTSQISSWAAELANG....... | 305 |
10 | -2.630 | HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310; | ali follow.. | 14 | 70 | .PWTLDKTDPALRRREIFPTEEGRTAVAQYLNDAYNAEPERWSAHPSILDCEPWTPPAPEPDAE............................................................... | 133 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98. |