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Query: PF00290.20; TRPA_MAIZE/94-347; Tryptophan synthase alpha chain, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRSLAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNALPLast
1 -4.660sp|Q9Y226|S22AD_HUMAN Solute carrier family 22 member 13 OS=Homo sapiens GN=SLC22A13 PE=2 SV=2  ali   12  14.......................................................................................................NHTFNLSAAEQLVLSVPLDTAGHPEP-CLMFRPPPANASLQDILSHRFNETQPCDMGWEYPEN........................................................................................ 75
2 -4.320sp|Q9UBD0|HSFX1_HUMAN Heat shock transcription factor, X-linked OS=Homo sapiens GN=HSFX1 PE=1 SV=1  ali   14  33................VVALPTASRSTLAMDTTGLPAPGML----PFCHLWVPVTLVAAGAAQPAAS........................................................................................................................................................................................... 79
3 -4.260sp|Q5T7M9|FA69A_HUMAN Protein FAM69A OS=Homo sapiens GN=FAM69A PE=2 SV=1  ali   10  7...............................................................................................KDCKKIICDKYKTGVIDGPACNSLCVTETLYFGKCLSTKPNNQMYLGIWDNLPGVVKCQMEQALHLDFGTELEPRKEIVLFDKPTRGTTVQKFKEMVYSLFKAKLGDQGNNLILTVADGDKDGQV.................................. 136
4 -3.970sp|Q6ZV50|RFX8_HUMAN DNA-binding protein RFX8 OS=Homo sapiens GN=RFX8 PE=2 SV=2  ali   8  1.............................................PVGSPLSEFRRCPFLEQ-EQAKKYSCNMMAFLADEYCNYCRDILRNVEDLLTSFWKSLQQDTVMLMSLPDVCQLFKCYDVQLYKGIEDVLLHDFLEDVSIQYLKSVQLFSKKFKLWLLNALEALLQISKLKEVTLFVKRLRRKTYLSNMAKTMRMVLKSKRRVSVLKS......................................... 170
5 -3.860tr|E7EWK8|E7EWK8_HUMAN Uncharacterized protein OS=Homo sapiens GN=PLOD1 PE=4 SV=2  ali   9  3.....DAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGL--------GEDWNVEKGTSAGGGQKVRLLKKALEKHADKEDLVILFADSYDVLFASGPRELLKK................................................................................................................................................. 98
6 -3.790sp|Q8N157|AHI1_HUMAN Jouberin OS=Homo sapiens GN=AHI1 PE=1 SV=1  ali   9  4...........................DLVLGVYIHRTDRLKSDFMISHPMVKIHVVDEHTGQYVKKDDSGRPVSSYYEKENVDYILPIMTQPY-----DFKQLKSRLPEWEEQIVFNENFPYLLRGSDESPKVILEILDFLSVDEIKNNSEVQNQECGAFLKLLGANGNANINSKLRLQLYYPPTKPRSPLSVVEA......................................................... 176
7 -3.770sp|O75129|ASTN2_HUMAN Astrotactin-2 OS=Homo sapiens GN=ASTN2 PE=2 SV=2  ali   15  1....................................GPKCLKPDSKFNDTL--GEMLHGYNNRTVNQGQVFQMTFRENNFIKDFPQLA-----------------------DGLLVIPLPVEEQ.................................................................................................................................. 66
8 -3.690sp|Q14999|CUL7_HUMAN Cullin-7 OS=Homo sapiens GN=CUL7 PE=1 SV=2  ali   11  1..............................EGYGPAGKILLDLEQALSSEGTQENKVKPLLLQLQRQPQPFLALMQSLDTPETNRTLHLTVLRILKQLVDFPEALL------------LPWHEAVD-------------ACMACLRSPNTDREVLQELIFFLHRLTSVS-LGARDAISKALEKHLGKLELAQEL-------VFKCEKHAHLYRKLITNILGG................................ 171
9 -3.650sp|Q12767|K0195_HUMAN Uncharacterized protein KIAA0195 OS=Homo sapiens GN=KIAA0195 PE=1 SV=1  ali   19  8.............................................................................................................................................................................RAKLPRGIHQVRPHLQNIDNVPLLVPFTDCTPETMCEMIKIMQE-CCLGSSA............................. 64
10 -3.630sp|O94885|SASH1_HUMAN SAM and SH3 domain-containing protein 1 OS=Homo sapiens GN=SASH1 PE=1 SV=3  ali   20  12....................RGVDLETLTENKLHAEGIDLTE---PYSDKHGRCGIPEALVQRAEDLDQPERDVAANMDQIRVK.......................................................................................................................................................................... 74
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.