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Query: PF01810.18; RHTC_ECOLI/13-206; LysE type translocator, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISRLast
1 -6.430sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=1  ali   1....FEVGAPVYFVTTLGYNFSSEAGMNAICS-SAGCNNFSFTQKIQYATEFPEQSYLAIPASSWVDDFIDWLTPSSCCRLYISGPNKDKFCPSTVNSLNCLKNCMSITMGSVRPSVEQFHKYLPWFLNDRPN............................................................. 128
2 -5.550sp|Q96LM5|CD045_HUMAN Uncharacterized protein C4orf45 OS=Homo sapiens GN=C4orf45 PE=2 SV=3  ali   18...MIFTGPDYIKDYLPKIQHTSYVGEQHLALEKTGDLRYLWRPASNRSLPAKYKH------EYVSE-----IGWRIPQYNFINKSRLGSGFHIKYEELSQASLDSITHRYQNP................................................................................ 118
3 -5.250sp|Q9H7Z3|CN102_HUMAN UPF0614 protein C14orf102 OS=Homo sapiens GN=C14orf102 PE=1 SV=3  ali   5...................................................................RWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCE-----------DPERQVLFDDIGQSLIRLSSHDLQFQLVEAFLQFLGV............................................. 75
4 -4.870sp|P78396|CCNA1_HUMAN Cyclin-A1 OS=Homo sapiens GN=CCNA1 PE=1 SV=1  ali   18  1VLATVARGPDACQILTRA-PLGQDPPQRTVLGLLTANGQYRRTCGQGITRI-RCYSGSENAFPPAGKKALPDCGVQE..................................................................................................................... 75
5 -4.780tr|B4DHZ3|B4DHZ3_HUMAN Uncharacterized protein OS=Homo sapiens GN=CARNS1 PE=2 SV=1  ali   16  2...............................................VTLCVLGSPSTFLPVLLEGGVMLLCLSPAWLMKVPAPGQPGEAALLVSKAVSFHPGGLTFLDDFVPPRRATYFLAGLG..................................................................... 84
6 -4.680tr|F5GZQ6|F5GZQ6_HUMAN Uncharacterized protein OS=Homo sapiens GN=CCDC61 PE=4 SV=1  ali   11  1...................................................MDQPAGLQVDYVFRGVEHAVRVMVS--GQVLELEVEDRMTADQWRGEFDAGFIEDLTHKTGNFKQFNIFCHMLESALTQSSESVTLDLL...................................................... 87
7 -4.680sp|Q9Y6R9|CCD61_HUMAN Coiled-coil domain-containing protein 61 OS=Homo sapiens GN=CCDC61 PE=1 SV=2  ali   11  1...................................................MDQPAGLQVDYVFRGVEHAVRVMVS--GQVLELEVEDRMTADQWRGEFDAGFIEDLTHKTGNFKQFNIFCHMLESALTQSSESVTLDLL...................................................... 87
8 -4.660sp|Q96BY7|ATG2B_HUMAN Autophagy-related protein 2 homolog B OS=Homo sapiens GN=ATG2B PE=1 SV=5  ali   10  1..................VLLNINHGLIAVFTDVKQDNGDLLENKHGEFWLEFNSGSLFCVTKYEGFDDKHYICLHS--------------------SSFSLYHKGIVNGVILPTETRLPSSTRPHWLEP................................................................ 92
9 -4.620sp|C9JH25|PRRT4_HUMAN Proline-rich transmembrane protein 4 OS=Homo sapiens GN=PRRT4 PE=2 SV=1  ali   16  1.FKGATPLPQGRSPFAPRESWRRAARTAPVAGTSGALQGYEVLHALGYGG---AFQLGLRLGEVGVALPLALLGLYPALCSPRVP............................................................................................................. 96
10 -4.580sp|Q96EW2|HBAP1_HUMAN HSPB1-associated protein 1 OS=Homo sapiens GN=HSPBAP1 PE=1 SV=1  ali   14  20...........................................................................QQIMSNSENAIEEQIASNTTTTPQTFISTDDLLDCLVNPQVTRIVAQLL...................................................................... 68

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.