Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public

If you have questions about the server, please let us know.

Query: PF02405.16; K9WIJ8_9CYAN/42-253; Permease MlaE, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210
# Score Template Links and tools%idFirst LLEQMATVGVGSLNPVILVAVFAGMIFTIQTARELSRFGAVNFVGGAFSLAFCRELAPILTASIVAGQVGSAYAAEIGAMQISEQIDALYMLKTDPINYLVIPRVVACFLMLPILTILALIMGIAGGVFVGMNFYNVPPDVFLNSVHELLEVRDLLNVVLKSLIFGVLIAIIGCSWGLTTKGGAKGVGQAATSAVVTSWISIFMFDFLISLALast
1 -6.080sp|Q9NVE7|PANK4_HUMAN Pantothenate kinase 4 OS=Homo sapiens GN=PANK4 PE=1 SV=1  ali   23  7.....................................................................GENYAGSSGLMSASPELGPAQRARSGTFDLLEMDRLERPLVDLPLL................................................................................................. 52
2 -5.680sp|Q4G0P3|HYDIN_HUMAN Hydrocephalus-inducing protein homolog OS=Homo sapiens GN=HYDIN PE=1 SV=3  ali   10  1.......................................................LGVPFLDIQTPDFEGLSWKQALESDKLPKGEQILDILGLGASGPPIPPPALFSIVSYP................................................................................................... 58
3 -5.660sp|Q5SQS8|CJ120_HUMAN Uncharacterized protein C10orf120 OS=Homo sapiens GN=C10orf120 PE=2 SV=1  ali   16  37......................................................KYSPLEKEILRLGGIHTIAARRLLAYKQEEECRMLKELQLLSPDYKQA.............................................................................................................. 84
4 -5.260sp|A6NP61|ZAR1L_HUMAN ZAR1-like protein OS=Homo sapiens GN=ZAR1L PE=2 SV=2  ali   22  26..................................................AILSQMNPSLSP-----RLCKPNTKEVG-VQVSPRVDKAVQCSLGP.................................................................................................................... 65
5 -4.980tr|B7ZBL6|B7ZBL6_HUMAN Family with sequence similarity 183, member A OS=Homo sapiens GN=FAM183A PE=4 SV=1  ali   10......................................................HLMCSLEVHTVTRKPMSWHDNL-EEPADARFLNLIHHAAQGPRKKYPETQTENQEV----------------GWDLEPLINPERHDRRLNHFRVCSDITLYKAKTWGL.................................................. 100
6 -4.740sp|O43149|ZZEF1_HUMAN Zinc finger ZZ-type and EF-hand domain-containing protein 1 OS=Homo sapiens GN=ZZEF1 PE=1 SV=6  ali   17  5..................................................................................SESKEGLDIHSSMILRFLHRNRLSSAVMPYPMLEHCNNMCTMRSSVL................................................................................... 51
7 -4.720tr|F8WB12|F8WB12_HUMAN Uncharacterized protein OS=Homo sapiens GN=TSSC1 PE=4 SV=1  ali   14  1....................................................MEDDAPVIYGLEFQARALTPQTAEVGTQSLKYDNQNKDWKEIGQKGLKIEPRVIF......................................................................................................... 62
8 -4.700sp|O43623|SNAI2_HUMAN Zinc finger protein SNAI2 OS=Homo sapiens GN=SNAI2 PE=1 SV=1  ali   11  4.............................................................SFLVKKHFNASKKPNYSELDTHTVIISPYLYESYSMPVIPQPEILSSGAYSPIT................................................................................................. 57
9 -4.580tr|C9J287|C9J287_HUMAN Uncharacterized protein OS=Homo sapiens GN=ZNF703 PE=4 SV=1  ali   16  3................................................AVSLLPPADPLRQANRLPIRVLKMLSAHTGHLLHPEYLQPLSSTPVSPIELDAKKSPLA......................................................................................................... 61
10 -4.540sp|Q12766|HMGX3_HUMAN HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2  ali   21  1.................................................LAAARPMRAILPAPVNVGRSSMGLPRARQAFSLSDKTPSVRTCGLKP.................................................................................................................... 48

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.