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Query: PF04826.13; ARMX3_MOUSE/110-363; Armadillo-like, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SPNSDDTVLSPQELQKVLCLVEMSEKPYILEAALIALGNNAAYAFNRDIIRDLGGLPIVAKILNTRDPIVKEKALIVLNNLSVNAENQRRLKVYMNQVCDDTVTSRLNSSVQLAGLRLLTNMTVTNEYQHILANSISDFFRLFSAGNEETKLQVLKLLLNLAENPAMTRELLRAQVPSSLGSLFNKKEYKEVILKLLIIFENINDNFKWEENEPAQNHFSEGSLFFFLKEFQVCADKVLGIESRHDFQVRVKVGLast
1 -22.300tr|D6RE95|D6RE95_HUMAN Uncharacterized protein OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1  ali   7  39NTETSEKIQASGILQLFASLL--TPQSSCKAKVANIIAEVAKNGEVYLKNFSAGNVFSFTSYLVYANSMCGCWIDFTTGAAA............................................................................................................................................................................ 118
2 -20.200tr|D6RBC6|D6RBC6_HUMAN Uncharacterized protein OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1  ali   7  38NTETSEKIQASGILQLFASLL--TPQSSCKAKVANIIAEVAKNGEVYLKNFSAGNVFSFTSYLVYANSMCGCWIDFTTGAAA............................................................................................................................................................................ 117
3 -11.900sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2  ali   10  1.........TQGLVLPLGKSSEERMERNAVAAFLLMLRNLQGHMVNQESLVQCQGPAIIGALLRK-DMNVLMSAQLLMEQVAAEGSGPLLYLLYQHLLFNFHLWTLSDFAVRLGHIQYMSSIVREHRQKLRKKYGVQFILDALRDDLRTVQTSLLGLAREFLVRSLSADDV---QVTQTMLSFLAATGDDGQAVGALDLLLALLHGSLVQESLALLEPGNLEVLLALLVRPGSLPL.................. 245
4 -11.300sp|Q5TIA1|MEI1_HUMAN Meiosis inhibitor protein 1 OS=Homo sapiens GN=MEI1 PE=2 SV=2  ali   15  25.............LACALELLPDPGVSLVRKKMLSCFQDALVRHTSQDQRVCIHFISVLFGLLCSEDGSVTDLCIEVLIQITTQLKLEQTIRCLLDE-CHKELCNMPSMRGSLATLTLLGKLALADELVMEHGNLMEHLLRGLVYPSEGIQASVCYLYGKLYSSPVAAEMLFREKLFPLFLSILDGAQTKELQINCLGLLRQLLKY................................................ 233
5 -11.200sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3  ali   12  13............KFAVLIGLIQVVSNRDIVETVLNLLVGGEFDLEMNFIIQDAESITCMTELLEHCDVTCQAEIWSMFTAILKSVRNLQTSTEVGLIEQVLLKMSAVDDMIADLLVDMLGVLAS----YSITVKELKLLFSMLRGESGIWPRHAVKLLSVLNQ........................................................................................... 162
6 -10.900sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3  ali   9  6........ICCGLYELLSGVLLILPDVLLEDVMDKLIQ-----------------ADTLLVLVNHPSPAIQQGVIKLLDAYASKEQKDKFLKNRGFSLLANQLYLHRGTQELLECFIEMFDLEDVRNMGLFQKWSVIPILGLIETSDNILLHNALLLLLQINSCSKVADMLLDNGLLYVLCNTVPMSEYKLLACDIQQLFIAVT.................................................. 211
7 -10.900sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3  ali   7  3.............VWTSTKASESRLERNLVATFILIVKHIQRHPINQGNLIHSHGVATLGALLQKVPSNVLMAVQLLIEQVSLEKNMQLLQQMYQYLLFDFRIWNRGDFPFRIGHIQYLSTIIKDSRRVFRKKYGVQFLLDTLRDDIRTIRTSLYGLIKYFLCKGGSHEEI------QSIMGYIAATNEEEQLFGILDVLFSLLRTSPTRGQLFLFEPGNADILYALL------------LNQKYSDRLREII. 246
8 -10.700sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4  ali   12  12............KFAVLTGLVEVGENRDIVETVFNLLVGGQFDLEMNFIIQEGESINCMVDLLEKCDITCQAEVWSMFTAILKSIRNLQVCTEVGLVEKVLGKIEKVDNMIADLLVDMLGVLAS----YNLTVRELKLFFSKLQGDKGRWPPHAGKLLSVLKH........................................................................................... 161
9 -10.500sp|Q6R327|RICTR_HUMAN Rapamycin-insensitive companion of mTOR OS=Homo sapiens GN=RICTOR PE=1 SV=1  ali   13  15HKTGCHLLEVQNIITELCRNVRTPDLDKWEKASLWALGNIGSSNWGLNLLQEENVIPDILKLAKQCEVSIRGTCVYVLGLIAKTKQGCDILKCHN............................................................................................................................................................... 115
10 -9.940sp|Q96M89|CC138_HUMAN Coiled-coil domain-containing protein 138 OS=Homo sapiens GN=CCDC138 PE=1 SV=1  ali   11  3....KSSNLPLRFLSTLI-VLKTVTQADYLAQAFDSLCLDLKTEEGKTLFLEYQAVPVILSHLRISSKGLLSNVIDSLLQMTVESKSLQPF-----------LEACSNSLFFRTCSVLLRAPKLDLQILEKLSIILQKLSKIKSNKKLFELFTIHLMLQEIQRTTNPEHAFLCINLNSTLFNL....................................................................... 169
11 -9.740sp|Q86VV8|RTTN_HUMAN Rotatin OS=Homo sapiens GN=RTTN PE=1 SV=3  ali   11  293.......LLHPKVLYEISVFGIQEPESEVNTAAKAILLYLLQGSDTEEMLPCTTRLKSMLRLLLVKKPSVRSLALKLLAFHLTSEEGADTKRPLIDARVLSRVTDLFIGKKPIEL-------LDDRRELVIKLETVEKVYEIFTSDDLVLRKSAAEQLAVIMQDIKMHAVVKKLCLIDKIIEYLNEKVVECLVQPCLTLLRKVL.................................................. 535
12 -9.700sp|Q9Y4B6|VPRBP_HUMAN Protein VPRBP OS=Homo sapiens GN=VPRBP PE=1 SV=3  ali   12  21.............................QRLILQYLTPLGEYQELLPIFMQLGSRELMMFYIDTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLLEI--PRPSMAATGVSMCLYYLSYNQDAHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRYDGLRRLVNLIST.................................................................... 186
13 -9.670sp|O60287|NPA1P_HUMAN Nucleolar pre-ribosomal-associated protein 1 OS=Homo sapiens GN=URB1 PE=1 SV=4  ali   12  232.............LQLFSELTRPEFVVDCRK------------------FLDSNALGLTVTALSSYDPQMRAIAYHVLAAYYSHLEGARFQEQSQLLYLLDVVRNGIRTQLALFIAKAALQILKPEEHEYLNMDKVPGFYQFFYSSDFEQKTEQKWVFGVLRQDKQCYELCARRGIFHIILSFFHSPLCDEAAQNWILEILQNAAQVARSAYEIIRDYSLLTWILHILESKFLETPLLSNVIS........... 465
14 -9.670tr|A6NLC4|A6NLC4_HUMAN Uncharacterized protein OS=Homo sapiens GN=ATXN10 PE=2 SV=4  ali   8  27....................................................................RALTALFKEQRNRNLDTIGVAV--DLILLFRELRVEQESLLTAFRCGLQFLGNIASRNEDSQSIV---ELFLSCLNHPDKKIVAYSSMILFTSLNHERMKELEENLNIAIDVIDAYQKHPESEWPFLIIELVQAMFPKLNNQERVTL-----LDLMIAKITSDEPLTKDDIPVFLRHAE....... 209
15 -9.550sp|Q96C12|ARMC5_HUMAN Armadillo repeat-containing protein 5 OS=Homo sapiens GN=ARMC5 PE=2 SV=2  ali   16  4...............................................................................................................EGPALLLLSRFSQAPDPSGALVPALYGLLTYVTGAPGPPSPRALRILSRLTCNPACLEAFVRSYGAALLRAWL...................................................................... 78
16 -9.360sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3  ali   11  21.......................................................................................................................................IRACVSMLGVPDPDTLHATLRLCLRLTRDHKYAMMFAELKSTRMILNLTQSSGFNGFTPLVTLLLRHIIED................................................ 92
17 -9.280sp|Q8IZQ1|WDFY3_HUMAN WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens GN=WDFY3 PE=1 SV=2  ali   13  1.....AVIIHPGAMLAMLDLLQPEHALDLQLAVANILQSLVHTERNQQVMCEAGLHARLLQALADEDHSLHPPLQRMFERLASQALEPMVLRE................................................................................................................................................................. 99
18 -9.110sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3  ali   12  2.......................................ILPSSGSEDLLWKWDALKAYQNFVFEEDRLHSIQIANHICNLIQNIVVQWKLYNYIFNPVLQRGVELAHHCQHLSVTSAQSHVCSHHNQCL----------------PQDVLQIYVKTLPILLKSRVIRDLFLSCNGVSQIIELNCLNGIRSHSLKAFETL...................................................... 148
19 -9.110sp|Q96C12|ARMC5_HUMAN Armadillo repeat-containing protein 5 OS=Homo sapiens GN=ARMC5 PE=2 SV=2  ali   11  15..........................................................................................................................................LTHLLLSGSPEDRVACALTLPFICRKPSLWRRLLEQGGLRLLLAALRPAPHPLFLFFAADSLSCLQDLVSPTVSPAVPQAVPMD................................ 100
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.