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Query: PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EDLIVWQKAHQFVLEVYQITGNFPKSEIYGLASQFRRASISIPANIAEGFKKKGDLDKVRFMNIAQASLEECRYYLILTKDLGYANTSESMLKLQEVSRLLDSLast
1 -7.170sp|Q8NI27|THOC2_HUMAN THO complex subunit 2 OS=Homo sapiens GN=THOC2 PE=1 SV=2  ali   12  65..LSLMDCNACMSEELWGMFKTFPYQHRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPS............................... 134
2 -6.660sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2  ali   16  15..................VFRDFTDEKEGPITKHIRLTAALILKNIGKYSECGRRLLKRHENNLSVLAISNMEASSTLAKCLYELNFTVQSKEQEKDSEMLQ. 98
3 -6.050tr|E9PFF8|E9PFF8_HUMAN Uncharacterized protein OS=Homo sapiens GN=C3orf17 PE=4 SV=1  ali   7  54KSQTLDAETDVLCAVLYSNHNRMGRHKPHLALKQVEQCNMNLEGSIQD-SSKVLYKGVLKRLILLYEPLFGLLQEVARIQPMPYFKDFTFPSDITEF...... 159
4 -5.900sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1 PE=1 SV=3  ali   16  3..LSEWSKNADMLFSIHPMDGSLLVWHVDWLDEYFRQVQVSFVSRIPVAFPTGDANSLCKSIMM....................................... 68
5 -5.830sp|Q96QP1|ALPK1_HUMAN Alpha-protein kinase 1 OS=Homo sapiens GN=ALPK1 PE=2 SV=3  ali   18  163QKLGMWYEAAELIWASIVGYLALPQPDKKGLSTSL-----GILADIFVSMSKNDYEKFKNNPQINLSLLKEFDHHLLSAAE...................... 238
6 -5.800sp|Q9NP73|ALG13_HUMAN UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Homo sapiens GN=ALG13 PE=1 SV=2  ali   19  18PPLPGFDSCLPVVPDYSCVPPWHPVGTAYGGSSQIHGAINPGPIGCI........................................................ 64
7 -5.650sp|Q8TDJ6|DMXL2_HUMAN DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2  ali   17  11..LTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYFRQVQVSFSSRIPVAFPSGDASSLSKNIMM....................................... 76
8 -5.650tr|B2RTR3|B2RTR3_HUMAN DMXL2 protein OS=Homo sapiens GN=DMXL2 PE=2 SV=1  ali   17  11..LTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYFRQVQVSFSSRIPVAFPSGDASSLSKNIMM....................................... 76
9 -5.650sp|Q13515|BFSP2_HUMAN Phakinin OS=Homo sapiens GN=BFSP2 PE=1 SV=1  ali   25  8.......................PSGCIGGLGARVTRRALGISSVFLQGLRSSG................................................. 38
10 -5.230sp|Q15573|TAF1A_HUMAN TATA box-binding protein-associated factor RNA polymerase I subunit A OS=Homo sapiens GN=TAF1A PE=1 SV=1  ali   11  70.....WQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPK----SNMESFNTFANRMKNIGVMNYLKISLQHALYLLHHGML............. 150
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;