current user: public

If you have questions about the server, please let us know.

Query: PF05721.13; Q92PC6_RHIME/55-292; Phytanoyl-CoA dioxygenase (PhyH), from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .
# Score Template Links and tools%idFirst ARLAGDCATQDGRRSVLAEICEALATGPGVAVFKRAFTDTRVIDEASGIFNEIIEEQHRTNSGGGDHFAKPGANDRIWNSLEKHCLKNPENFAAYYGNAIIALVSEAWLGPNYQMTAQVNRVNPGGASQSPHRDYHLGFQTSAVIEQYPAHVHRLSPVLTLQGAVAHCDMPVESGPTLFLPYSQTYLPGYLALKRPEFRTYFEENHVQLPLEKGDVVFFNPALFHAAGSNRSAGIKRVLast
1 -7.630sp|P38435|VKGC_HUMAN Vitamin K-dependent gamma-carboxylase OS=Homo sapiens GN=GGCX PE=1 SV=2  ali   11  43..........................................................................................................................................................................DLGNTSIQLLQGEVTVEL--------------VAEQKNQTLREGEKMQLPAGEYHK--YTTSPSPSCY 95
2 -6.900sp|A8MXV4|NUD19_HUMAN Nucleoside diphosphate-linked moiety X motif 19, mitochondrial OS=Homo sapiens GN=NUDT19 PE=1 SV=1  ali   15  10.........................................................................................................................................................................LLTADGMVHLLPGDELYLEDSDFLENLMSTEKKTEEIMKEGKQFHRIVTYHRHLYHVYPKNSVVRKSHL 89
3 -5.400sp|Q5HYC2|K2026_HUMAN Uncharacterized protein KIAA2026 OS=Homo sapiens GN=KIAA2026 PE=2 SV=2  ali   10  64..........................................................................................................................................................IQQKIVINTSTPLAPGTQ-NGTRFIVPGSH...................................................... 101
4 -5.220sp|Q8WUA4|TF3C2_HUMAN General transcription factor 3C polypeptide 2 OS=Homo sapiens GN=GTF3C2 PE=1 SV=2  ali   5.................................................................................................................................................................GVTVAQDNCYASYGLCGIH-GFKAYFTAPRKGTVWSLSGSDWLGTIAAGDISGELIAILPDMALNPINVKRPVERRF 88
5 -4.980tr|C9J6Y3|C9J6Y3_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC26A6 PE=4 SV=1  ali   4....ADASGPRDTQALLSATQAMDLRRRDYHMERPLLNQEHLEEL................................................................................................................................................................................................. 44
6 -4.980sp|Q9BXS9|S26A6_HUMAN Solute carrier family 26 member 6 OS=Homo sapiens GN=SLC26A6 PE=1 SV=1  ali   4....ADASGPRDTQALLSATQAMDLRRRDYHMERPLLNQEHLEEL................................................................................................................................................................................................. 44
7 -4.980tr|B4DMZ1|B4DMZ1_HUMAN Uncharacterized protein OS=Homo sapiens GN=SLC26A6 PE=2 SV=1  ali   4....ADASGPRDTQALLSATQAMDLRRRDYHMERPLLNQEHLEEL................................................................................................................................................................................................. 44
8 -4.820sp|O43303|CP110_HUMAN Centriolar coiled-coil protein of 110 kDa OS=Homo sapiens GN=CCP110 PE=1 SV=3  ali   14...........................KGFLT-RRLMQTDKLKQLRQTVKDTME-QSEAPLKRGIVSAQDASLQERVLAQLRAALYGIHDIFFVMDAAERMSIL...................................................................................................................................... 93
9 -4.770sp|A1A5B4|ANO9_HUMAN Anoctamin-9 OS=Homo sapiens GN=ANO9 PE=2 SV=2  ali   13  38..LVAQRHTQRDPRQARQQQFLEELRRKGFQVFFGIRADNSVFGLYRTFLLEPEGPAPHAELAAPTTIPVTTSLR-VNFVVMNNKTSAGETFEDLMKDGVFEARFEGRLKKTWARWRHMFREQP.................................................................................................................. 175
10 -4.470sp|Q9NSI6|BRWD1_HUMAN Bromodomain and WD repeat-containing protein 1 OS=Homo sapiens GN=BRWD1 PE=1 SV=4  ali   1...........MAEPSSARRPVPLIESELYFLIARYLSAGPCRRAAQVLVQELEQYQ-----PKRLDWEGNEHNRSYEELVLSNKHVAPDHLLQICQRPPSISRVTSLLGAG.............................................................................................................................. 107

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.