Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public

If you have questions about the server, please let us know.

Query: PF07476.11; A8AJ73_CITK8/162-410; Methylaspartate ammonia-lyase C-terminus, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .
# Score Template Links and tools%idFirst CVPEAIPLFGQSGDDRYIAVDKMILKGVDVLPHALINNVEEKLGFQGEKLREYVRWLSDRILSLRTSPRYHPTLHIDVYGTIGLIFDMDPVRCAEYIASLEKEAQGLPLYIEGPVDAGNKPDQIRLLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIHNIVDAVLYCNKHGMEAYQGGTCNETEISARTCVHVALAARPMRMLVKPGMGFDEGLNIVFNEMNRTIALLQLast
1 -4.820tr|F8W1V5|F8W1V5_HUMAN Uncharacterized protein OS=Homo sapiens GN=ATP2B1 PE=4 SV=1  ali   11  3......................................................................................................................................................TLAELRALMELRSTDALRKIQESYGDVYGICTKLKTSPNEGEF........................................................ 45
2 -4.710sp|Q8IVU5|CC046_HUMAN Putative uncharacterized protein C3orf46 OS=Homo sapiens GN=C3orf46 PE=5 SV=1  ali   14  24..................................................................................................................................................................SQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHLPLLEGGSTASG....................................... 71
3 -4.700sp|A4D126|ISPD_HUMAN 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase-like protein OS=Homo sapiens GN=ISPD PE=3 SV=2  ali   4.................................................................................................................................LEEVLKSELNHVKVTSEALGHAGRHLQQIILDQCYNFVCVNVTT-SDFQETQKLLSMLEESSLCIL...................................................... 68
4 -4.490sp|Q6ZNJ1|NBEL2_HUMAN Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2  ali   10  1................................................................................................LRTLCTLGPNETAPFKPE------GELHELSTRLLLHYSPQACKNNICLDLSPSHGLDGRLTGHRVETWDVKDVVNCVGGMGALLPLLE................................................................ 83
5 -4.180tr|C9JJQ6|C9JJQ6_HUMAN Uncharacterized protein OS=Homo sapiens GN=WDR64 PE=4 SV=1  ali   1...............................................................................................YCGYFGQRRLFELSQTRDFILPCDVTEYPIEIKEESKFTEKQKYEYPLIFDR...................................................................................................... 52
6 -4.150tr|Q5TCC5|Q5TCC5_HUMAN Isoleucyl-tRNA synthetase (Fragment) OS=Homo sapiens GN=IARS PE=2 SV=1  ali   15  28...........................................................................................................VLLLENPKGDNRLD-LLKLKSVVTSIFGVKNTELAVFHDETIQNQTDLLSLSGKTLC..................................................................................... 84
7 -4.050tr|B1AK20|B1AK20_HUMAN DnaJ (Hsp40) homolog, subfamily C, member 11 (Fragment) OS=Homo sapiens GN=DNAJC11 PE=4 SV=1  ali   11  1......................................................................TISVGVDATDLFDRYDEEYEDVSGSSFPQIEINKMHISQSIEAPLTATD---TAILSGSLSTQNGNGGGSINFALRRVTSAKGWGERMTDCLIIGLIDICQR............................................................................. 99
8 -4.010sp|Q86UB2|BIVM_HUMAN Basic immunoglobulin-like variable motif-containing protein OS=Homo sapiens GN=BIVM PE=2 SV=3  ali   13  36.......LYSTMGAGNLPPITQEEALHILGF-QPPFEDIRFGPFTGNTTLMRWFRQINDHFHVLYKPHGKNKTAGETASGALSKLTRGLKDESLAYIYHCQNHYFCPIGFEATPVKANKAFS--------RGPLSPQEVEYWILIGESCKKWADIVTDLNTQNPEYLDIRHLERG.......................................................................... 208
9 -4.000sp|Q5JSL3|DOC11_HUMAN Dedicator of cytokinesis protein 11 OS=Homo sapiens GN=DOCK11 PE=1 SV=2  ali   1................QLRYIQQGIFSVTNPHPEIFLVARIKVLQGNITHCAEPYIKNSDPVKTAQKVHRTAKQVCSRLGQYRMPFAWAARPIFKDTQGSLDLDGRFSPLYKQDSSKLSSEDILKLLSEYKKPEKTKLQIIPGQLNITVECVPVDLS-----TSSYVPLKPFEKNCQNITVEVEEFVPEM........................................................... 173
10 -3.970sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3  ali   13  19...............................................................................GQLGSVIIFYEPLQPPQVKALYLAGPNCLSPWKC-----QESDMADLPGNILLYYTAKACKNSICLDLSTNCLHGRLTGNKVVNWDIKDI-INCIGGLNVLFPLLE................................................................ 118

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;