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Query: PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMGLast
1 -6.800sp|Q9HAS3|S28A3_HUMAN Solute carrier family 28 member 3 OS=Homo sapiens GN=SLC28A3 PE=1 SV=1  ali   23  1.......STPVDINCHHVLENAFNSTFPGNTTKVIACCQSLLSSTVAKG........................................... 42
2 -5.720sp|Q92613|JADE3_HUMAN Protein Jade-3 OS=Homo sapiens GN=PHF16 PE=1 SV=1  ali   12  4QEPVFSPHLVSQGSFRKSTVEHFSRSFKETTNRWVKNTEDLQCYVKPTKNMSPKEQ.................................... 59
3 -5.420sp|A6NFE2|CL070_HUMAN Uncharacterized protein C12orf70 OS=Homo sapiens GN=C12orf70 PE=2 SV=2  ali   17  22......KELGADYIDGTEKIDNIIKKINVTENTVKSLLKDMLTLKGQIEKLEDRGLDLDQGTSTEVNTCNEVYELKKKVIERLEDLCKNVE. 106
4 -5.170sp|Q9NX04|CA109_HUMAN Uncharacterized protein C1orf109 OS=Homo sapiens GN=C1orf109 PE=2 SV=1  ali   13  6PLLAVQEALKKCFPVVEEQQGLWQSALRDCQPLLSSLSNLAEQLQAAQNLRFEDVPALRAFPDLKERLRRKQLVAGDIVLDKLGERLAILL. 96
5 -4.780tr|B4DH93|B4DH93_HUMAN Uncharacterized protein OS=Homo sapiens GN=DEPDC5 PE=2 SV=1  ali   10  12.TKTWRSSATGDEKFADRLLKDFTDFCINRDNRLVTFWTSCLEKMHASA........................................... 59
6 -4.780sp|O75140|DEPD5_HUMAN DEP domain-containing protein 5 OS=Homo sapiens GN=DEPDC5 PE=2 SV=1  ali   10  12.TKTWRSSATGDEKFADRLLKDFTDFCINRDNRLVTFWTSCLEKMHASA........................................... 59
7 -4.440sp|Q9NRR4|RNC_HUMAN Ribonuclease 3 OS=Homo sapiens GN=DROSHA PE=1 SV=2  ali   12  169....................PRFVRFLPDGGKEVLSMHQILLYLLRCSKALVPEEEIANMLQWEELEWQKYAEECKGMIVKPSSVRIDQLD. 244
8 -4.330sp|Q8IWF9|CCD83_HUMAN Coiled-coil domain-containing protein 83 OS=Homo sapiens GN=CCDC83 PE=2 SV=2  ali   16  8LEIWENDWLKKEVAIHRKEVEELKNAIHELEAENLVLIDQLSN................................................. 50
9 -4.310sp|Q96JB2|COG3_HUMAN Conserved oligomeric Golgi complex subunit 3 OS=Homo sapiens GN=COG3 PE=1 SV=3  ali   9  104.............EFFTKPTSKLDELLEKLCVSLLETLSELCGILKNEVLEDHVQNNAEQLGAFAAGVKQMLEDVQERLVYRTHIYIQT... 192
10 -4.230sp|Q96LT7|CI072_HUMAN Uncharacterized protein C9orf72 OS=Homo sapiens GN=C9orf72 PE=2 SV=2  ali   7  379AFLDQVFQLKPGLSLRSTFLAQFLLVLHRKALTLIKYIEDDTQKGKKPFKSLRNLKIMALAEKIKPGLHSFIFGRPFYTSVQERDVLMTF.. 481
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;