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Query: PF09847.9; O29125_ARCFU/30-435; Membrane protein of 12 TMs, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SLRVQVAKSFFIMTFLGSFLCWVAFISSGLGLSLIFTLSLVFSQIYPAQNIAISASSRVFEPLRYLPVRFSERMLVVFFIDSINILAFATPTIAVLMVKNLYFGLYSLLWIIAAILLGYSMVFLYYALFGVKVRSGFSKSVLAGILFFAVLVFALRRFQEIPDLTPYLTPHLLLLSYAASSATIKLSTGRVWRSILNPEIVEVKGSSRLSSGSPLRAMLIKDFRLILRKNALFPLIVPLVIVMPNVVSIANMPNLSIFIITTISTLSTIDLRIIGNLENVDFLRMLPLSKRGFVMSKACLIFVISFAASLPAGSIAFIVSQNPFYLFMAFAIPAIVSMLSSLIIFWQKGEEIYFPEVGFLKWIGLLLVNFGAVYAVLSPRFILSQPVADIISSVLTLLAMTALFEKLast
1 -5.300sp|Q9Y2G1|MRF_HUMAN Myelin gene regulatory factor OS=Homo sapiens GN=MRF PE=1 SV=3  ali   23  1......................................................................................................................................................................................................................................................................................................................................................................................ACISQRFLQGTIIALVVVMAFSVVSMSTLY.. 30
2 -5.210sp|Q6ZTK2|YP015_HUMAN Putative uncharacterized protein LOC400499 OS=Homo sapiens PE=2 SV=1  ali   29  26........................................................................................................................................................................................................................................................................................................................................................................KWEGVL--NLDSPWLMVSAAHRLYWPHRAVFQAVLELTLGKAW... 66
3 -5.180sp|O75420|PERQ1_HUMAN PERQ amino acid-rich with GYF domain-containing protein 1 OS=Homo sapiens GN=GIGYF1 PE=1 SV=2  ali   26  1.............................................................................................................................................................................................................................................................................................................................................................QGIPRPQDGFTQWCEQMLHTLSATGSLDVPMAV-PYDVHDYIRSCLGDTLEAKEFAK 64
4 -4.890tr|E9PCV4|E9PCV4_HUMAN Uncharacterized protein OS=Homo sapiens GN=SPHK2 PE=4 SV=1  ali   10  6......................................................................................................................................................................................................................................................................................................................PYISHSAKPTVSQVNQPACGMLTPSSWTFLPACFPAVSRAPRTLPGMGGTQALGSARFTLGTVLGLATLH.......................... 75
5 -4.750tr|Q5JRT7|Q5JRT7_HUMAN Translocase of outer mitochondrial membrane 5 homolog (Yeast) OS=Homo sapiens GN=TOMM5 PE=2 SV=1  ali   23  1..............................................................................................................................................................................................................................................................................................................................................................................MFRIEGLAPKLDPEEMKRKMREDVISSIRNFLIYVALLR. 39
6 -4.450sp|Q8IYW4|ENTD1_HUMAN ENTH domain-containing protein 1 OS=Homo sapiens GN=ENTHD1 PE=2 SV=1  ali   27  1..................................................................................................................................................................................................................................................................................................................................................LTILPACWSSKEEFISPDLRVSK-SDSTFHNQASVETLLSPSFKIFDRVKEIVIN............. 55
7 -4.400sp|Q5SV97|CA170_HUMAN Uncharacterized protein C1orf170 OS=Homo sapiens GN=C1orf170 PE=2 SV=3  ali   16  5........................................................................................................................................................................................................................................................................................................................LALRRAGELRGPVPSFAFSQNDMCLVFVAFATWAVRTSDPHTPDA----WKTALLANVGTISAI---RYFRRQ..................... 70
8 -4.320sp|Q8TEQ6|GEMI5_HUMAN Gem-associated protein 5 OS=Homo sapiens GN=GEMIN5 PE=1 SV=3  ali   29  12..........................................................................................................................................................................................................................................................................................................................................................................................PESIKAWPFPDVLECCLVLLLIRS.... 35
9 -4.300tr|B1AKN0|B1AKN0_HUMAN Phosphatidylserine decarboxylase (Fragment) OS=Homo sapiens GN=PISD PE=4 SV=1  ali   27  11..................................................................................................................................................................................................................................................................................................................................................................PELRAAKWLHFPQL---ALRRRLGQLSCMSRPALKLRSWPLTVLYYLLPF.. 57
10 -4.070sp|Q14207|NPAT_HUMAN Protein NPAT OS=Homo sapiens GN=NPAT PE=1 SV=3  ali   10  10.........................................................................................................................................................................................................................................................................................................................................................................................GSAIIIASPVQPVLQGMVGMIPVSVVGQN 38
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.