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Query: PF11047.8; SOPD2_SALTY/1-319; Salmonella outer protein D, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPVTLSFGNRHNYEINHSRLARLMSPDKEEALYMGVWDRFKDCFRTHKKQEVLEVLYTLIHGCERENQAELNVDITGMEKIHAFTQLKEYANPSQQDRFVMRFDMNQTQVLFEIDGKVIDKCNLHRLLNVSENCIFKVMEEDEEELFLKICIKYGEKISRYPELLEGFANKLKDAVNEDDDVKDEVYKLMRSGEDRKMECVEWNGTLTEEEKNKLRCLQMGSFNITTQFFKIGYWELEGEVLFDMVHPTLSYLLQAYKPSLSSDLIETNTMLFSDVLNKDYDDYQNNKREIDAILRRIYRSHNNTLFISEKSSCRNMLILast
1 -6.270sp|Q6ZNB7|ALKMO_HUMAN Alkylglycerol monooxygenase OS=Homo sapiens GN=AGMO PE=1 SV=1  ali   23  8..........................DKNYAGVLIIWDKI---F-GTFEAENEKVVYGLTHPINTFEPIKVQ--------FHHLFSITFWATPGFFNKFSV.......................................................................................................................................................................................................................... 72
2 -5.600sp|Q9Y6J0|CABIN_HUMAN Calcineurin-binding protein cabin-1 OS=Homo sapiens GN=CABIN1 PE=1 SV=1  ali   84IVIRL--NLHNDSVVSLEEIDKNLKSLERCQ----SLEEIQRLYEAGDYKAVVHLLRPTLCTSGFDRAKHLEFMTSIPERPAQLLLLQD...................................................................................................................................................................................................................................... 167
3 -5.290sp|Q9UIB8|SLAF5_HUMAN SLAM family member 5 OS=Homo sapiens GN=CD84 PE=1 SV=1  ali   17....LNTFTKNPYAASKKTIYTYIMASNTQPAESRIYDEILQSKVLPSKEEPVNTVYSEVQFADKMGKASTQDSKPP--GTSSYEIV........................................................................................................................................................................................................................................ 98
4 -5.170sp|Q86WV6|TM173_HUMAN Transmembrane protein 173 OS=Homo sapiens GN=TMEM173 PE=1 SV=1  ali   12  89LYILLPLDCGVPDNLSDPNIRFLDKLPQQTGDHAGIKDRVRAGTCVLEYATPLQTLFAMSQYSQAGFSREDR-----LEQAKLFRTLEDILAPESQNNCRIAYQEPADDSSFSLSQEVL........................................................................................................................................................................................................ 221
5 -5.160sp|Q8N0W7|FMR1N_HUMAN Fragile X mental retardation 1 neighbor protein OS=Homo sapiens GN=FMR1NB PE=1 SV=1  ali   2......SGSSYFVLANGHILPNSENAHGQSLEEDSALEALLNFFFPTTCNLRENQVAKPCNELQDLSESE---SSSGTTSFKCFAPFRD...................................................................................................................................................................................................................................... 89
6 -4.860sp|Q9Y3R5|DOP2_HUMAN Protein dopey-2 OS=Homo sapiens GN=DOPEY2 PE=1 SV=5  ali   13  7..............IAPGILKVIAEKTD-QRVARVLWNQLNK--TREHHVTCVELFYRLHCLAPTANICEDPDKGTRLEALFRFSVIWHLTREIQGSRVTSHNRSFDRSLFVVLD............................................................................................................................................................................................................ 115
7 -4.610sp|Q8TF30|WHAMM_HUMAN WASP homolog-associated protein with actin, membranes and microtubules OS=Homo sapiens GN=WHAMM PE=1 SV=2  ali   12  49.................ESPREFRERALRARWVEA--ARLRQVIQGHGKANTMVALMNVYQEEDEAYQELVTVATMFFQLLQPFRAMREVA.................................................................................................................................................................................................................................... 122
8 -4.560sp|Q9P0V3|SH3B4_HUMAN SH3 domain-binding protein 4 OS=Homo sapiens GN=SH3BP4 PE=1 SV=1  ali   16  5..................................AMWKPAYDFLLGDSYRDVIQELHLGLDKMKNPITKRWKHLTGTLILVNSLDVLRAAASPADQDDFVI.......................................................................................................................................................................................................................... 78
9 -4.520sp|Q8N2C7|UNC80_HUMAN Protein unc-80 homolog OS=Homo sapiens GN=UNC80 PE=2 SV=2  ali   11SPAPLSLLIKAAPILTEEMYGDIQPA---------AWELLLS---DEHMAGAAAAMFLLCAVKVPEAVSDM-HHPETVQRLNAVLKFHTLMEEGAQQIFKI.......................................................................................................................................................................................................................... 114
10 -4.390sp|Q5U5R9|HECD2_HUMAN Probable E3 ubiquitin-protein ligase HECTD2 OS=Homo sapiens GN=HECTD2 PE=2 SV=2  ali   5.............PKTVKDFQEDVEKVKSSGDWKAVHDFYLTTF---DSFPELNAAFKKDATASFNTIEDSGINAKFVNAV--YDTLLNT..................................................................................................................................................................................................................................... 76

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35