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Query: PF11701.8; F6ZSU7_XENTR/243-434; Myosin-binding striated muscle assembly central, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190
# Score Template Links and tools%idFirst SALNLLMKVVPRKSFRDPDNGMTLWVIDTGLKKILEVGGSLVEFPGSLSVTESTRMSASVLLNKLFDDLKCDAERENFHKLCEDYVRSLFEGHGMDGKLRSIQTVSCLLQGPSEAGNRTLELTGIMESIISLCASEREIDQQVAVEALIYAAGKAKRASFITANGVALLKDIYKKNENDAIRIRALVGLCKLLast
1 -12.900sp|Q14669|TRIPC_HUMAN Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1  ali   10  2..................................................GPAVRHKCLRAILRIIYFADAELLKDVLKNHVSSHIASMLSSQDLKIVVGALQMAEILMQKLPDIFSVYFRREGVMHQVKHLAESESLLTSP.................................................. 94
2 -12.500tr|D6RE95|D6RE95_HUMAN Uncharacterized protein OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1  ali   10...................................................................................KKLKITAVDKTEDSLEGCLDCLLQALAQNNTETSEKIQASGILQLFASLLTPQSS-CKAKVANIIAEVAKNGEVYLKNFSAGVFSFTSYL-VYANSMCGCWIDFTTGAA 117
3 -9.660tr|D6RBC6|D6RBC6_HUMAN Uncharacterized protein OS=Homo sapiens GN=RAP1GDS1 PE=4 SV=1  ali   11  9...................................................................................KKLKITAVDKTEDSLEGCLDCLLQALAQNNTETSEKIQASGILQLFASLLTPQSSCKAKVANIIAEVAKNGEVYLKNFSAGNVFSFTSYL-VYANSMCGCWIDFTT... 113
4 -9.530sp|Q9NRP7|STK36_HUMAN Serine/threonine-protein kinase 36 OS=Homo sapiens GN=STK36 PE=1 SV=2  ali   3.........................................................ISSALAAICTAPVGLPDCWDAKEQVCWHLANQLTEDSSQLRLHLLKVLYSCCLVSEGLCRLLGQEPLALESLFMLIQVDWEESTEVTLYFLSLLVFRLQNLPCGMEKLGSDVATLFTHSHVVSLVSAAACLLGQL 155
5 -9.180sp|Q9Y4B6|VPRBP_HUMAN Protein VPRBP OS=Homo sapiens GN=VPRBP PE=1 SV=3  ali   11  38..............................MSQLIEKETERKGDPDPFDDRHPGRADPECMLGHLLRILFKND------DFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDIAANYRDENSQLVAIVLRRLR............... 180
6 -8.860sp|Q86VV8|RTTN_HUMAN Rotatin OS=Homo sapiens GN=RTTN PE=1 SV=3  ali   4...................................................................................AGLIRKLGHQLAEIRERALKSILCKIEHNLICYADLIQERQLFLHLLEWFNFPSVPMKEEVLNLLSRLVKYPPAVQHLVDVGAVEFLSKLRSNVEPNLQAEIDGILDGL 112
7 -8.690sp|Q70CQ2|UBP34_HUMAN Ubiquitin carboxyl-terminal hydrolase 34 OS=Homo sapiens GN=USP34 PE=1 SV=2  ali   17  11.....................................................................................................................VLVQGTSLIQRLMSVAYTYDEVSHYSMWLLVSWAHCCSLVKSSLADS-QDWLKKLTLLIPETAVRHESCSGLYKL 104
8 -8.190sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=3  ali   14  21................................................TMLPSIRKASLALIRKMIHFCSEALLKEVCDSDVGHNLPTILQEDDDDGHLLALQIIRDLVDKGGDIFLDQLARLGVISKV............................................................... 110
9 -8.140sp|Q6YHU6|THADA_HUMAN Thyroid adenoma-associated protein OS=Homo sapiens GN=THADA PE=1 SV=1  ali   11  1..................................................................SGLGEKGVPPLLCNMGEKFLLLAMKENHPECFCKILKILHCM-WLPQTEHCVHLTPKEFLIWTMDIASNERSEIQSVALRLASKVISNRELIAAELKQWVQLVILSCEDHLPTESRLAVVEVLTST 137
10 -8.140tr|B6ZDQ0|B6ZDQ0_HUMAN Uncharacterized protein OS=Homo sapiens GN=THADA PE=4 SV=1  ali   11  1..................................................................SGLGEKGVPPLLCNMGEKFLLLAMKENHPECFCKILKILHCM-WLPQTEHCVHLTPKEFLIWTMDIASNERSEIQSVALRLASKVISNRELIAAELKQWVQLVILSCEDHLPTESRLAVVEVLTST 137

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 5 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.