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Query: PF15935.5; I5B0B2_9DELT/91-316; RNase LS, bacterial toxin, from PfamA32U

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst HNNCITYRKIKQDDFELLLEYLDTEEAVKSESLEPYKTNNNHTIFKISSIYKDETTLTQYANQTILLQGRPLYIYNVIKSFINELIDFDQVVEIESDLYKIDLKPDVVREELESRLFAVYGRFDEKILKVMTPALSLMKIDVELEDYSCCIYPALRGLEGYIRMLLSEFSKEYKTVGRLGSLFDENKSYETMLFLKDDIKNDVVCKSLQNAYFMYVKHRHPLFHTDLast
1 -6.890tr|Q5T191|Q5T191_HUMAN FAD1 flavin adenine dinucleotide synthetase homolog (S. cerevisiae) OS=Homo sapiens GN=FLAD1 PE=2 SV=1  ali   6  1..............MKGLFQNPAVQFHSKELYVAADEASIAPILAEAQAHFGRRLGLGSYPQVKLTLDSEEEGPLEECLAYLTARLPQGSLVPYMPNAVEQASEASGNYLMFQTPSRSCISAASPLSLSWNSFYRTLSR....................................................................................... 138
2 -4.950sp|Q92736|RYR2_HUMAN Ryanodine receptor 2 OS=Homo sapiens GN=RYR2 PE=1 SV=3  ali   12  4...............KVVLPLIDQYFKNHRLYFLSAASRPLCSGGHASNKEKEMVTLGVLVRHRISLFGNDATSIVNCLHILGQTLDARTVMKT---------GLESVKSALRAFLDNAAEDLEKTMENLKQGQFTHTRVTQIINYTTVALLPMLSSLFEHIGQ.............................................................. 153
3 -4.830sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2  ali   20  6...................................................................................................RAPGVSVPLQLGLPDTVPPQYGALREVSIHTVRARLRL------LYHFSDLMYSSWRLLN................................................................... 59
4 -4.770sp|O75161|NPHP4_HUMAN Nephrocystin-4 OS=Homo sapiens GN=NPHP4 PE=1 SV=2  ali   13  92NEPLYFHTSLNHPHIVAVVEVVAEGKK---RDGSLQTLSCGFGILRIFSNQPDSPISASQDKRLRLYHGTPRALL--HPLLQDPAEQNRHMTLIENCSLQYTLKPHPALEPAFHLLPENL-PAHGESGDALRKPRLQKPITGHLDDLFFTLYPSLEKFEEELLELHVQ.......................................................... 265
5 -4.750sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3  ali   11  5.........IYPEICMLELNLLSASKAKLDVLAH------------VFESFLKIIRQKEKNVFLLMQQGTVKNLLGGFLSILTQDDSDRVLVDLLVSLMSSRTCSEELTLLLRIFLEK-----SPCTKILLLGILKIIESDTTMSPSQYLTFPLL....................................................................... 138
6 -4.560sp|P21817|RYR1_HUMAN Ryanodine receptor 1 OS=Homo sapiens GN=RYR1 PE=1 SV=3  ali   13  4...............KILLPLINQYFTNHCLYFLSTPAKVLGSGGHASNKEKEMITLAALVRHRVSLFGTDAPAVVNCLHILARSLDARTVMKS---------GPEIVKAGLRSFFESASEDIEKMVENLRLGKVSQARTQVNLTYTTVALLPVLTTL.................................................................... 147
7 -4.430sp|Q9GZU0|CF062_HUMAN Uncharacterized protein C6orf62 OS=Homo sapiens GN=C6orf62 PE=2 SV=1  ali   6  2.................................................SLADQFDFKMYIAFVFKEKKKKSALFEEVIPVMTNNYEENILKGVRDSSYSLESSLELLQKDVVQLHAPRYQSMRRDVIGCTQEMDFILWPRNDIEKIVCLLFSRWKESDEPFRPVQAKFEFVLSRKDKTGIVVNNPNQSVFLFIDRQHLQTPKNKATIFKLCSILYLPQEQLTHWA 192
8 -4.360sp|Q15413|RYR3_HUMAN Ryanodine receptor 3 OS=Homo sapiens GN=RYR3 PE=1 SV=3  ali   10  4...............KVLLPLVDQYFTSHCLYFLSSPLKPLSSSGYASHKEKEMVALAALVRHRISLFGSDSTTMVSCLHILAQTLDTRTVMKS---------GSELVKAGLRAFFENAAEDLEKTSENLKLGKFTHSRTQIQNINYTTVA--LLPILTSIFEHV............................................................. 151
9 -4.260sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein OS=Homo sapiens GN=TRRAP PE=1 SV=3  ali   11  14.....TFKEIFQTTVPYMVERISKNYALQ-------------------------IVANSFLANPTTSALFATILVEYLLDRLPEMGSNVELSNLYLKLFKLVFGSVSLFAAENEQM------LKPHLHKIVNSSMELAQTAKEPYNYFLLLRALFRSIGG.................................................................. 137
10 -4.260sp|Q9UID3|FFR_HUMAN Protein fat-free homolog OS=Homo sapiens GN=FFR PE=1 SV=2  ali   15  156................................................................LLLSRLCLDYETATISYILTLTDEQFLVQDQFPVTPVSTLCAEARETARRLLTHYVKVQGLVISQMLRKSV-------ETRDWLSTLEP--RNVRAVMKRVVEDTTAIDVQ................................................... 257
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.