current user: public
If you have questions about the server, please let us know.

Query: PF00015.21; MCPC_SALTY/326-483; Methyl-accepting chemotaxis protein (MCP) signalling domain, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .
# Score Template Links and tools%idFirst TGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTLast
1 -73.4003zx6_A mol:protein length:341 HAMP, METHYL-ACCEPTING CHEMOTAXIS PROTEIN I  ali model follow..  78  114SHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVT 271
2 -43.6002ch7_A mol:protein length:309 METHYL-ACCEPTING CHEMOTAXIS PROTEIN  ali model follow..  37  78ASFADQSTQLAKEAGDALKKVIEVTRMISNSAEEITSFVETINAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESQQASENVRRVVSEITARVEEGTKLADEADEKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTENAKNA 263
3 -38.2003g67_A mol:protein length:213 Methyl-accepting chemotaxis protein  ali model follow..  25  48...LKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKARESLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVL 209
4 -35.7004jpb_B mol:protein length:90 Methyl-accepting chemotaxis protein  ali model follow..  39  1..................GSHMSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKARE............................................................. 79
5 -18.5005cwg_A mol:protein length:210 Designed helical repeat protein  ali model follow..  15  35REAFELVREAAERAGIDSSEVLEAIRLIKEVVENAQREGYDISEAARAAAEAFKRVAEAAKRAGITSS--EVLELAIRLIKEVVENAQREGYDISEAARAAAEAFKRVAEAAKRAGITSSETLKRAIEEIRKRVEEAQREGNDISEAARQAAE..... 186
6 -14.3004tql_A mol:protein length:247 Three helix bundle  ali model follow..  13  109EKLKQIMQEAKQKMEKLLKQLKEEMKKMKEKKKKMDGDDELLEKIKKNIDDLKKIAEDLIKKAEENIKEAKKIAEQLVKRAKQLIEKAKQVAEELIKKILQL------IEKAKEIAEKVLKGLE.................................. 241
7 -11.7001sj8_A mol:protein length:308 Talin 1  ali model follow..  14  155.....NLLQAAGNVGQASGELLQQIGESDTDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIATQCALSTSQLVACTKVVAPTISSCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLLRGVGAAATAVTQALNELLQHVKA..... 306
8 -9.0505cwc_A mol:protein length:210 Designed helical repeat protein  ali model follow..  13  50IDSSEVLELAIRLIKECVENAQREGYDISEACRAAAEAFKRVAEAAKRAGITSSEVLELAIRLIKE------CVENAQREGYDISEACRAAAE-VAEAAKRAEEIRKRVEEAQREGNDISEACRQAAEEFRKKAEELKRRGDGWLE............ 204
9 -7.7603okq_A mol:protein length:141 Bud site selection protein 6  ali model follow..  9  1.....GSAKNSSNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIM--RKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDLKEDLGKALETFDLIKLCCEEQEK................ 135
10 -7.5904f7g_B mol:protein length:216 Talin-1  ali model follow..  18  64....................................QMLTAVQEISHLIEPLASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLS-MALLDQTKTLAESALQLLYTA-EAVQMMTEAVEDLTTTLNEAASAAGVVGGMVDSITQAINQLDEGP 205
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;