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Query: PF00290.20; TRPA_MAIZE/94-347; Tryptophan synthase alpha chain, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRSLAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNALPLast
1 -98.1001tjr_A mol:protein length:261 BX1  ali model follow..  100  8MAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMSRSLAEMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNALP 261
2 -97.0001rd5_A mol:protein length:262 Tryptophan synthase alpha chain, chloroplast  ali model follow..  99  9MAALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNAL. 261
3 -91.8005ey5_A mol:protein length:273 LBCATS-a  ali model follow..  46  8FEELKKKGEKALIPFITAGDPDLETTLELVRALVEAGADIIELGIPFSDPLADGPTIQRASQRALASGTTLDKVFEMVRELREKTDVPIVFLTYYNPIFRYGIERFAEAGVDGLIVPDLPPEEAADLAAAAEKYGVDLIFLVAPTSTDERIKMIAKHASGFVYCVSVTGVTGARSEIAADLAELVSRIRKHTDLPIAVGFGISTPEQAAEVAQV-ADGVIVGSAIVKRIEENQDEEDIVEEVREFVRELREAVK 265
4 -91.2001xcf_A mol:protein length:268 Tryptophan synthase alpha chain  ali model follow..  31  8FAQLKERKEGAFVPFVTLGDLGIEQSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLAIIREKPTIPIGLLMYANLVFNKGIDEFEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADDDLLRQIASYGRGFTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHNEPEKMLAALKVFVQPMKAATR 267
5 -91.2001ujp_A mol:protein length:271 Tryptophan synthase alpha chain  ali model follow..  36  7FAKARSEGRAALIPYLTAGFPSREGFLQAVEEV-LPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKARTALPVAVGFGVSGKATAAQAA--VADGVVVGSALVRALEEGRSLAPLLQEIRQGLQRLEANPG 261
6 -91.1001v7y_A mol:protein length:268 Tryptophan synthase alpha chain  ali model follow..  31  8FAQLKERKEGAFVPFVTLGDPGIEQSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKPTIPIGLLMYANLVFNKGIDEFEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPDQVKAAIDAGAAGAISGSAIVKIIEQHNEPEKMLAALKVFVQPMKAATR 267
7 -91.1001a50_A mol:protein length:268 TRYPTOPHAN SYNTHASE (ALPHA CHAIN)  ali model follow..  33  8FAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKPTIPIGLLMYANLVFNNGIDAFEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNASPKQMLAELRSFVSAMKAASR 267
8 -90.9003vnd_A mol:protein length:267 Tryptophan synthase alpha chain  ali model follow..  32  9FAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHDMPIGLLLYANLVFANGIDEFQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKIIEAHHDEATLLAKLAEFTTAMKAAT. 267
9 -90.9003nav_A mol:protein length:271 Tryptophan synthase alpha chain  ali model follow..  31  11FQRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARPETPIGLLMYANLVYARGIDDFQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFDAPPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHDNPAKQLTELANFTQAMKKATK 270
10 -90.7005kzm_A mol:protein length:272 Tryptophan synthase alpha chain  ali model follow..  33  12FANLEKRNEGAFIPFVTIGDPNKALSFEIIDTLVSSGADALELGIPFSDPLADGPTIQEANIRALESGITPKDCFDILTKIRAKPHIPIGLLLYANLVYANGIENFLDAGVDSILIADVPAHESKEFRDIAKKVGIAQIFIAPPDASESTLKQISELGSGYTYLLSRVGVTGTETAANMPVEDVLTKLREYNAPKPVLGFGISKPEQVQQAIKAGAAGAISGSATVKIIQNNSNKQKMLNELTYFVKEMKAATL 271
11 -89.5001geq_A mol:protein length:248 TRYPTOPHAN SYNTHASE ALPHA-SUBUNIT  ali model follow..  37  2......FKDGSLIPYLTAGDPDKQSTLNFLLAL-DEYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEK--GREATEFLKKKVEELLG... 247
12 -89.3005k9x_A mol:protein length:275 Tryptophan synthase alpha chain  ali model follow..  36  11LEKLKANRKKMLSPYITAGDPYPELTVSLMHQLVKSGADVLELGIPFSDPMAEGPVIQRAMERALAHSIHCDDVLNMVRQFRKTTETPVILMGYLNPIEQYGYDLFVEAGVDGTILVDLPPEEADGVSRVWQKHGLYSIYLCSPTTSAERMNYINQHANGYLYYVSLKGVTGSDALKLPELKAQYLQRKAQSKLPLMVGFGIKTPEMAAQVAEF-ADGVIVGAALINEIIEAEAKKDPLQASGALLSSMRQAID 269
13 -88.7003tha_A mol:protein length:252 Tryptophan synthase alpha chain  ali model follow..  30  5VDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK--KALVFMVYYNLIFSYGLEKFKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKV-ADGVIVGTSIVKCFKQG-NLDIIMKDIEEIFKK...... 252
14 -88.3005tcf_A mol:protein length:276 Tryptophan synthase alpha chain  ali model follow..  32  16FDSCRANNRAALIGYLPTGYPDVPASVAAMTALVESGCDIIEVGVPYSDPGMDGPTIARATEAALRGGVRVRDTLAAVEAISIA-GGRAVVMTYWNPVLRYGVDAFAAAGGLGLITPDLIPDEAQQWLAASEEHRLDRIFLVAPSSTPERLAATVEASRGFVYAASTMGVTGARDAVSQAAPELVGRVKAVSDIPVGVGLGVRSRAQAAQIAQY-ADGVIVGSALVTALTEGLPRRALTGELAAGVRLGMSA.. 270
15 -87.9005kin_A mol:protein length:258 Tryptophan synthase alpha chain  ali model follow..  33  9LNAIKAAGKGIFVPYIMAGDHELDGLAETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETE--IPLVIMTYFNPLFQYGVENFADTAVKGLIIPDLPHEHANFVEPFLANTDIALIPLVSLTTGIERQKELIEGAEGFIYAVAINGVTGKSGNYRADLDKHLAQLHQVADIPVLTGFGVSSQADLERFNAV-SDGVIVGSKIVKALHQGEPIQDFIRQAVAYQK....... 258
16 -87.5002ekc_A mol:protein length:262 Tryptophan synthase alpha chain  ali model follow..  35  8FTELKEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEPDIPFLLMTYYNPIFRIGLEKFREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTTGAREKLPYEIKKKVEEYRELCDKPVVVGFGVSKKEHAREIGSF-ADGVVVGSALVKLAGQKK-----IEDLGNLVKELKEGLR 261
17 -87.3005ocw_A mol:protein length:290 Tryptophan synthase alpha chain  ali model follow..  32  30FDSCRANNRAALIGYLPTGYPDVPASVAAMTALVESGCDIIEVGVPYSDPGMDGPTIARATEAALRGGVRVRDTLAAVEAISIA-GGRAVVMTYWNPVLRYGVDAFAAAGGLGLITPDLIPDEAQQWLAASEEHRLDRIFLVAPSSTPERLAATVEASRGFVYAASTMGVTGARDAVSQAAPELVGRVKAVSDIPVGVGLGVRSRAQAAQIAQY-ADGVIVGSALVTALTEGLPRRALTGELAAGVRLGMSA.. 284
18 -79.1005n2p_A mol:protein length:241 Tryptophan synthase alpha chain  ali model follow..  22  2.........KMLVVYMTLGYPNVQSFKDFIIGAVENGADILELGIPPKYAKYDGPVIRKSYDKVKGLD-----IWPLIEDIRKDVGVPIIALTYLEDWVDQLLNMIKDVKLDGILFPDLLIDYIDDIDGIIKNKGLKNVIFTSPSVPDLLIHKVSKISDLFLYYGVRPTTGVPIP---VSVKQLINRVRNLVENKLIVGFGLSSESDLRDALSAGADGIAIGTVFIEEIERNG-----VKSAINLVKKFRAILD 239
19 -39.3004nae_B mol:protein length:227 Heptaprenylglyceryl phosphate synthase  ali model follow..  14  1...MEEIRAWR---HVFKLDPNKPIDDERLERLCESGTDAVIVG--GTDGVTIDNVLDLLARIRRFSVPCALEVTDVEALTPG-FDVYLVPIVLNSRQAEWIIGRHHEVKQYGDMMNWDEIAAEGYCILNPECKAAKLTRADTELDVDDIVAYARLAEHLYKLPIFYLEYSGVYGD--PSVVEKVKQAL--DQTQLFYGGGITTPEQAEHMAR-YADTVVVGNAIYDAFEQALATVAAVK.............. 227
20 -38.5003w01_A mol:protein length:235 Heptaprenylglyceryl phosphate synthase  ali model follow..  13  1......AGAGAMYDHIFKLDPAKHISDDDLDAICMSQTDAIMIG--GTDDVTEDNVIH-------------------LMSKIRRYPLPLVLEISNIESVMPGFDFYVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKKANTDLTTEDLEAYAQMVNHMYRLPSGIYGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYKDIKKALKTVKIKESSK........... 235
21 -37.6005b69_A mol:protein length:246 Geranylgeranylglyceryl phosphate synthase  ali model follow..  16  11....KTRNGKVHMTLIDPGAKPPQECARIAEEAEMAGTDFIMVG--GSTDIDSRAMDE------------------AISAIKAKTDLKVIIFPGSSLMISPKADAILLNSGSLEYVVGHQVKAAIPLSAMKIEKIPMAYLVFDPGMTVGRVGKLSYALAAQYFGFRLVYFEAGSGSPYHVGENVVRRVKQELDIPVIVGGGIRTPEAAKALAQAGADMIVTGTIAER-------SVNVYEALHPIVESIKE... 246
22 -37.1002f6u_A mol:protein length:234 (S)-3-O-Geranylgeranylglyceryl Phosphate Synthase  ali model follow..  14  11..............HITKLDPDRTNTDEIIKAVADSGTDAVMIS---GTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNVVYDVDVPTVLNSADGDWIAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIYIEYSGTYGNPELVAEV----KVLDKARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEKGIDA...................... 228
23 -36.2005ndy_A mol:protein length:256 Geranylgeranylglyceryl phosphate synthase  ali model follow..  16  13....ILRERKIHLTLIDPEEQTPEEAVEIARAAIRGGTDGIMLGGSTTDSSELDNTARA---------------------LRENIDVPIILFPGNTTGVSRYADAILLNSTNPYWIIGAQALGAATVKKMGIEALPMGYLVVEPGGTVGWVGDTAYAMEAEFLGMRLFYLEAGSGAPEHVPEEMIALVKRCTDQILIVGGGIRSGEDAARVAGAGADVVVTGTVVEN-------SDNVEDKIREIVEGMGSVLE 250
24 -35.1001viz_A mol:protein length:240 PcrB protein homolog  ali model follow..  15  11..............HVFKLDPNKDLPDEQLEILCESGTDAVIIG--GSDGVTEDNVLR-------------------MMSKVRRFLVPCVLEVSAIEAIVPGFDLYVLNSKNADWIVGMHQKAMKEYGELMSMEEICKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGVLGD--IEAVKKTKAVETSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYEDFDRALKTVAAVKGEEG.......... 232
25 -30.6004jej_A mol:protein length:244 Geranylgeranylglyceryl phosphate synthase  ali model follow..  14  13ILEAKKNGQKLLAILLDPDKIVWENLDHLLLKINQSPATHIFVGGSIVESTIIEDLIAQ---------------------LKQKTRLPVVIFPGDPSQISPKADAILLSGRNPDYLIEYQVQAAPILKKTNLEVISTGYILIESPLNRENFDLALATAQAGEMLGSKLIYLEAGSGAKKPVPEMISVISQNVEIPIIVGGGIVDLHGIKKAYNAGADLVVIGTAFEN........................... 236
26 -16.5001y0e_A mol:protein length:223 Putative N-acetylmannosamine-6-phosphate 2-epimerase  ali model follow..  10  8.......................................IVSCQALPDEPLHSSFIMSKMALAAYEGGAV-AIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKRFVQVMED............. 223
27 -16.3003q58_A mol:protein length:229 N-acetylmannosamine-6-phosphate 2-epimerase  ali model follow..  17  3.....................AMSLLARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRI-ENLRTVRPHLSVPIIGIVRITPYLQD-VDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFI--TTLSGYTGPITPVEPDL-AMVTQLSH-AGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIEHICQWFSHAVKR............. 229
28 -16.2005zjb_A mol:protein length:253 Putative N-acetylmannosamine-6-phosphate 2-epimerase  ali model follow..  13  15.....................NFLNIEELKRFLNGQT--VVSIQPVTGSPLDKTDFIVAMAIAVEQAGAKALRIVSNVAAVSAAVTIPIIGIVVRITPFVSDVDGLANAGATVIAFDATNRTRPESRERIAQAIKNTGCFAMADCSTFEDGLWANSQGVEIV--STLSGYVGDIEPTVPDF-QLVKAFSE-AGFFTMAEGRYNTPELAAKAIESGAVAVTVGSALTRLEVVTQWFNNATQAAGE.......... 242
29 -15.9003vk5_A mol:protein length:286 MoeO5  ali model follow..  12  30VLARLREHQPGPVHIIDPFKVPVTEAVEKAAELTRLGFAAVLLA-------TDYESFESHME-------------PYVAAVKAATPLPVVLHFPPRP----GAGFPVVRGADALLLPALLGSGDDYFVWKSFLETLAAFLTFGEDPRTGDLLGTVPVSTASTEEIDRYLHVALYSRNEHVPPEVVRHFRKGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQ--------PDWRSALAEIAGRRPAA.. 278
30 -15.8004utt_A mol:protein length:229 PUTATIVE N-ACETYLMANNOSAMINE-6-PHOSPHATE 2-EPIMERASE  ali model follow..  16  4.....................................LDVVKGNLIVSEPLHSSFIMGRMAIAAKQGGAARAQGVNDINEIKEVTKLPIIGIIIYITPTMKEVDELLKTDCEMIALTKRKRPNGENVKDLVDAIHAKGRLAMADISTLEEGIEAEKLGFDCV-STTLSGYTPYSKQSNSVDFELLEELVKTVKIPVICEGRINTPEELKKALDLGAYSAVVGGAITR........................... 210
31 -15.1003igs_A mol:protein length:232 N-acetylmannosamine-6-phosphate 2-epimerase 2  ali model follow..  13  3.....................AMSLLEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIEDNLRMTRSLVSVPIIGIIVRITPFLDDVDALAQAGAA-IIAVDGTARQRPVAVEALLARILL---TMADCSSVDDGLACQRLGADII--TTMSGYTTPDTPEEPDL-PLVKALHD-AGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRLEHICGWYNDALKKAAS.......... 228
32 -14.8003tdn_A mol:protein length:247 FLR SYMMETRIC ALPHA-BETA TIM BARREL  ali model follow..  18  1...GSESSSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYD----TEMIRFVRPLTTLPIIASGGAGKMEH--FLEAFLRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDALLRDWVVEVEKRGAGEILLTSID-RDGTKSGYDTEM---IRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSINTAAVE........................... 234
33 -14.7005zkn_A mol:protein length:241 Putative N-acetylmannosamine-6-phosphate 2-epimerase  ali model follow..  15  24.......................................IVSCQALEDEPLHSSFIMGRMAYAAYSGGAAGIRAVEDIKEIKKNVSLPIIGIIVYITPTIKEVEDLINEGVQIIAI-----KDLKNFIAEIKEKYPNQL-FMADISSVDEALYAEKIGFDIV--TTLVGYTDYTKNYKA---EELKKVVKVVKIPVIAEGNIDTPLKAKKALEIGAFAVVVGGAITR---------------QQITKKFVDEMK 235
34 -14.6004fx7_A mol:protein length:251 Imidazole glycerol phosphate synthase subunit HisF  ali model follow..  18  2.........QRVVVAIVAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRVGTKSGYD----TEMIRFVRPLTTLPIIASGGAGKMEH--FLEAFLAGADKVSINTAAVENPSLITQIAQTFGSQAVVVATGILLRDWVVEVEKRGAGEILLTSI-DRVGTKSGYDTEM---IRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKVSINTAAVE........................... 229
35 -13.9003og3_A mol:protein length:251 Imidazole glycerol phosphate synthase subunit hisF  ali model follow..  18  2.........QRVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYD----TEMIRFVRPLTTLPIIASGGAGKMEH--FLEAFLAGADKVSINTAAVENPSLITQIAQTFGSQAVVVATGILLRDWVVEVEKRGAGEILLTSID-RDGTKSGYDTEM---IRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKVSINTAAVE........................... 229
36 -13.8003ovp_A mol:protein length:228 Ribulose-phosphate 3-epimerase  ali model follow..  16  15.....................DLANLGAECLRMLDSGADYLHLDV-FVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKP-------------------EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGG--QKFMEDMMPKVHWLRTQPSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMR----SEDPRSVINLLRNVCSEAAQ... 222
37 -13.6003f4w_A mol:protein length:211 Putative hexulose 6 phosphate synthase  ali model follow..  18  5...............LALDELTLPEAMVFMDKV-VDDVDIIEVGTPFL--IREGV--------------------NAIKAIKEKYHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQ-QAAGRKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQ.......... 209
38 -13.4003inp_A mol:protein length:246 D-ribulose-phosphate 3-epimerase  ali model follow..  18  17....NAMKHIQINPSILSA--DLARLGDDVKAVLAAGADNIHFDV------MDNHYVPNLT----------PMVLKALRDYGITAGMDVHLMV------DALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGG--QKFIPAMLDKAKEISKWIDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFN----SDSYKQTIDKMRDELNKV..... 240
39 -13.2001h1y_A mol:protein length:228 D-RIBULOSE-5-PHOSPHATE 3-EPIMERASE  ali model follow..  16  1...MAAAAAAKIAPSMLSS--DFANLAAEADRMVRLGADWLHMDI------MDGHFVP-----------NLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDY-VEPLAKAGASGFTFIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLG-PSTIDVAASAGANCIVAGSSIFG----AAEPGEVISALRKSVEGSQN... 226
40 -13.2001yxy_A mol:protein length:234 Putative N-acetylmannosamine-6-phosphate 2-epimerase  ali model follow..  16  2....................PDKPTKEKLMEQLKGG---IVSCQALPGEPLETGGIMPLMAKAAQEAGAVRANSVRDIKEIQAITDLPIIGIIPFITATMTEVDQLAALNIAVIAMDCTKRDRHDSFIRQVKEKYPNQL-LMADISTFDEGLVAHQAGIDFV-GTTLSGYTPYSRQEAGPDVALIEALCK-AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR------------EIAERFIEALKS... 234
41 -12.9005umf_A mol:protein length:235 Ribulose-phosphate 3-epimerase  ali model follow..  17  2.....AMTAYRIAPSILSA--DFARLGEEVANVIAAGADLIHFDV------MDNHYVP-----------NLTFGPMVCAALKPYASVPIDVHLMVEPVDDL-IQSFAKAGASIITFHPEASRHIDRSLSLIRDMGCQAGLVLNPATPVYVLENVLDRLDMVLLMSVNPGFGG--QSFIPHTLEKIRQVRAMLDIAIEVDGGIK-TDNIAAVARAGADTFVAGSAIFG----KPDYKAVIAAMRAELEK...... 226
42 -12.9002fli_A mol:protein length:220 ribulose-phosphate 3-epimerase  ali model follow..  13  14.....................DYANFASELARIEETDAEYVHIDI------MDGQFVP-----------NISFGADVVASMRKHSKLVFDCHLMVVDPERY-VEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGG--QAFIPECLEKVATVAKWRSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKA-----------SDLVSQVQTLRTALN 219
43 -12.9004lt9_A mol:protein length:269 Engineered Protein OR404  ali model follow..  16  37ILEFNKSNITAIIAYYTRKSPSVERDPIEYAKFMERYAVGLSI---------------------KTEEKYFNGSYEMLRKIASSVSIPILMNDFIVKESQIDDAYNLGADTVLLIASILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFISIKSKLSSTGGYSSSYSINKENQRKLISMIPSNVVKVAATFKVSERNEIEELRKLGVNAFLISSSLMR........................... 249
44 -12.6001xbx_A mol:protein length:216 3-keto-L-gulonate 6-phosphate decarboxylase  ali model follow..  15  8...............VALDNQTMDSAYETTRLIAEE-VDIIEVGTILC--VGEGV--------------------RAVRDLKALYHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTKGALDVAKEFNGDVQIDLTGYWTWEQAQQWRDAGIGQVVYHRSVDAQAAGVAWGEADITAIKRLSD-MGFKVTVAGGLA-LEDLPLFKGIPIHVFIAGRSIRD----AASPVEAARQFKRSIAEL..... 214
45 -12.6004ml9_A mol:protein length:286 Uncharacterized protein  ali model follow..  12  62...........................AVALARGHKGVITMH--------------AAEQVRHEIPLDEMLKVTQGVRNVVGEDIYITVGVPGGFTEILPLEFFKIAMSGADGVHIHKSTLEDLKDVVKYAHKYGLLVDAYITPEEVAEAAKEMEKIGVDMIGLMTGMSYEGTAAGEIHPVIERLSALVSSVKVPTLAEGGIND-TNYVAFKDTGVNILVIGTSIDNVVSE-----AATNVVKKFLSLKKQA.. 286
46 -12.5003tr9_A mol:protein length:314 Dihydropteroate synthase  ali model follow..  12  44..................PHLDLNSALRTAEKMVDEGADILDIGGEATNPFVD------IKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTSRPRV----MREAVNTGAD--MINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPLQSVKKELQESIQRCKKAGISEDRIIIDPGFGYLLNKLPEFVAMGLPVLSGWSRKSMIGDVLNQPPENRLFGSIAADVLA........................ 263
47 -12.5005d38_A mol:protein length:264 De novo kemp eliminase KE07 round 7-2  ali model follow..  18  1......................MALAKRIDAALIMKDGRVVKG-RDSGDPVELGKFYSEIGIDELASVEKRKTMLELVEKVAEQIDIPITVGGGIHDFET--ASELILRGADKVEFNTAAVENPSLITQIAQTFGSQAVVVYTGILLRDWVVEVEKRGAGEIVLGSI-DRLGTKSGYDTEM---IRFVRPLTTLPIIAHRGAGKMEHFLEAFLAGADAAKADSVFHS........................... 230
48 -12.5002w6r_A mol:protein length:266 IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF  ali model follow..  16  2.........QRVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYD----TEMIRFVRPLTTLPIIASGGAGKMEH--FLEAFLAGADKALAASVFHFREIDMRELKEYLK-AVVVAITGILLRDWVVEVEKRGAGEILLTSI-DRDGTKSGYDTEM---IRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF........................... 234
49 -12.5004z08_A mol:protein length:264 de novo designed kemp eliminase KE07  ali model follow..  18  1......................MALAKRIIAALIVKDGRVVKG-RDSGDPVELGKFYSEIGIDELASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFET--ASELILRGADKVEINTAAVENPSLITQIAQTFGSQAVVVYTGILLRDWVVEVEKRGAGEIVLGSI-DRLGTKSGYDTEM---IRFVRPLTTLPIIAHGGAGKMEHFLEAFLAGADAAKANSVLHF........................... 230
50 -12.4004nu7_A mol:protein length:246 Ribulose-phosphate 3-epimerase  ali model follow..  14  1...MSSQLKPIICPSVLAS--DLSSLASDAKRMVDAGCDWLHLDI------MDGHFVP-----------NISFGPGVVKALRGHLKSAFFDVHLMVSEPEKWIQPFADAGANSITFVGGDLQRAAELAKRIQARGIKAGLAIKPATKFEDLGEALAGDNDMLLVMTVEPGFGGQKFMADMLQKVRTARSLFPKLNIQVDGGLD-GETVKPAASAGANVIVAGTSMFK----AENPAALMTFMRDVIAASDTLGE 232
51 -12.3006cai_A mol:protein length:264 Kemp Eliminase KE07  ali model follow..  18  1......................MALAKRIDAALILKDGRVVKG-RDSGDPVELGKFYSEIGIDELASVEKRKTMLELVEKVAEQIDIPITVGGGIYDFET--ASELILRGADKVEINTAAVENPSLITQIAQTFGSQAVVVYTGILLRDWVVEVEKRGAGEIVLGSI-DRLGTKSGYDTEM---IRFVRPLTTLPIIAHRGAGKTEHFLEAFLAGADAAKADSVFHS........................... 230
52 -12.3004a29_A mol:protein length:258 ENGINEERED RETRO-ALDOL ENZYME RA95.0  ali model follow..  16  37ILEFNKRNITAIIAVYERKSPSVERDPIEYAKFMERYAVGLSI---------------------TTEEKYFNGSYETLRKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIG---------ARFIGIMSRDETGEINKENQRKLISMIPSNVVKVA-GISERNEIEELRKLGVNAFLISSSLMRNPEKIKELIEGSLE............. 252
53 -12.3001ka9_F mol:protein length:252 imidazole glycerol phosphate synthase  ali model follow..  15  1......................MSLAKRIVPCLDVHAGRVVKG-RDAGDPVEAARAYDEAGADELATHEERAILLDVVARVAERVFIPLTVGGGVRSLED--ARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLPTGLHAVEWAVKGVELGAGEILLTSM-DRDGTKEGYDLRL---TRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF........................... 230
54 -12.3003nyz_A mol:protein length:261 Indole-3-glycerol phosphate synthase  ali model follow..  15  37ILEFNKRNITAIIAAYKRKSPSVERDPIEYSKFMERYAVGLAI---------------------ATEEKYFNGSYETLRKIASSVSIPILMWDFIVKESQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPAIVINDENDLDIALRIG---------ARFIEIASRDETLEINKENQRKLISMIPSNVVKVA-GISERNEIEELRKLGVNAFGIGSSLMRNPEKIKEFILGSIEG............ 253
55 -12.2005d2x_A mol:protein length:264 De novo desinged kemp eliminase KE07  ali model follow..  18  1......................MALAKRIDAALIMKDGRVVKG-RDSGDPVELGKFYSEIGIDELASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFET--ASELILRGADKVEINTAAVENPSLITQIAQTFGSQAVVVNTGILLRDWVVEVEKRGAGEIVLGSI-DRLGTKSGYDTEM---IRFVRPLTTLPIIAHRGAGKMEHFLEAFLAGADAAKADSVFHF........................... 230
56 -12.2001h5y_A mol:protein length:253 HISF  ali model follow..  17  4.........................ALRIIPCLDIDGGAKVVV-REVGDPVEMAVRYEEEGADEIAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLED--ATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVATGLDAVKWAKEVEELGAGEILLTSI-DRDGTGLGYDVEL---IRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF........................... 232
57 -12.2001w0m_A mol:protein length:226 TRIOSEPHOSPHATE ISOMERASE  ali model follow..  18  79.......................................................................................................ENIKEAGGSGVIL--LKLNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAIVETVGLVSRHFEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVK-------AKDPYAKIVELAKPLSEL.. 225
58 -12.2001rpx_A mol:protein length:230 PROTEIN (RIBULOSE-PHOSPHATE 3-EPIMERASE)  ali model follow..  16  7.....SKSDIIVSPSILSA--NFSKLGEQVKAIEQAGCDWIHVDV------MDGRFVP-----------NITIGPLVVDSLRPITDLPLDVHLMIVEPDQR-VPDFIKAGADIVSV---STIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGG--QSFIESQVKKISDLRKICNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG----APDYAEAIKGIKTSKRP...... 229
59 -12.2001kv8_A mol:protein length:216 3-Keto-L-Gulonate 6-Phosphate Decarboxylase  ali model follow..  14  8...............VALDNQTMDSAYETTRLIAEE-VDIIEVGTILC--VGEG--------------------VRAVRDLKALYHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD-MGFKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG....... 216
60 -12.2004pa8_A mol:protein length:258 retro-aldolase  ali model follow..  16  37ILEFNKRNITAIIAYYLRKSPSVERDPIEYAKYMERYAVGLSI---------------------KTEEKYFNGSYEMLRKIASSVSIPILMNDFIVKESQIDDAYNLGADTVLLIVNILTERELESLLEYARSYGMEPLILINDENDLDIALRIG---------ARFIVIFSMNETGEINKENQRKLISMIPSNVVKVA-DISERNEIEELRKLGVNAFLISSSLMRNPEKIKELIEGSLE............. 252
61 -12.2001xm3_A mol:protein length:264 Thiazole biosynthesis protein thiG  ali model follow..  12  7.......GGKSFQSRLLLGTGKYPSFDIQKEAVAVSESDILTFAV-------------RRMNIFEASQPNFLEQLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQGIL------LNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSG----ADDPVKMARAMKLAVEAGRLS.. 233
62 -12.1002a0n_A mol:protein length:265 Imidazole glycerol phosphate synthase subunit hisF  ali model follow..  18  1.................MGSDKIMLAKRIIACLDVKDGRVVKG-RDSGDPVELGKFYSEIGIDELASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFET--ASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVNTGILLRDWVVEVEKRGAGEILLTSI-DRDGTKSGYDTEM---IRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF........................... 235
63 -12.1006c8b_A mol:protein length:264 Kemp eliminase KE07  ali model follow..  18  1......................MALAKRIDAALIVKDGRVVE--RDSGDPVELGKFYSEIGIDELASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFET--ASELILRGADKVEINTAAVENPSLITQIAQTFGSQAVVVYTGILLRDWVVEVEKRGAGEIVLGSI-DRLGTKSGYDTEM---IRFVRPLTTLPIIAHRGAGKMEHFLEAFLAGADAAKADSVFHF........................... 230
64 -12.1002h6r_A mol:protein length:219 Triosephosphate isomerase  ali model follow..  20  76.......................................................................................................EAIKDCGCKGTLI--MLLADIEAVINKCKNLGLETIVCTNNINTSKAVAALSPDCIAVEPPELIGTGIPVSKANPEVVEGTVRAVKEINDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVK-------AKNVEEAIRELIKFI..... 219
65 -12.1005an7_A mol:protein length:258 RA95.5-8F  ali model follow..  16  37ILEFNKRNITAIIAYYLRKSPSVERDPIEYAKYMEPYAVGLSI---------------------KTEEKYFDGSYEMLRKIASSVSIPILMNDFIVKESQIDDAYNLGADTVLLIVEILTERELESLLEYARGYGMEPLILINDENDLDIALRIG---------ARFITIYSMNETGEINKENQRKLISMIPSNVVKVP-DFFEPNEIEELRKLGVNAFMISSSLMRNPEKIKELIEGSLE............. 252
66 -12.1002htm_A mol:protein length:268 Thiazole biosynthesis protein thiG  ali model follow..  13  7.......GPVELKSRLILGSGKYEDFGVMREAIAAAKAEVVTVSVRRVELKAPGHVGLLEALEGVRLLPNTAGARTAEEAVR---------------LARLGRLLTGERWVKLEVIPDLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKA--SLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRKAYLAG.. 237
67 -12.1003tc7_A mol:protein length:258 Indole-3-glycerol phosphate synthase  ali model follow..  16  37ILEFNKRNITAIIAEYKRKDPSVERDPIEYAKFMERYAVGLFI---------------------STEEKYFNGSYETLRKIASSVSIPILMYDFIVKESQIDDAYNLGADTVALIVKILTERELESLLEYARSYGMEPLIIINDENDLDIALRIG---------ARFIGIAARDETGEINKENQRKLISMIPSNVVKVA-GISERNEIEELRKLGVNAFLIGSSLMRNPEKIKELIEGSLE............. 252
68 -12.1004a2s_A mol:protein length:258 INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE  ali model follow..  16  37ILEFNKRNITAIIAYYSRKSPSVERDPIEYAKFMERYAVGLSI---------------------KTEEKYFNGSYETLRKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIG---------ARFIGIFSMNETGEINKENQRKLISMIPSNVVKVA-GISERNEIEELRKLGVNAFLISSSLMRNPEKIKELIEGSLE............. 252
69 -12.0004a2r_A mol:protein length:258 INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE  ali model follow..  17  37ILEFNKSNITAIIAYYTRKSPSVERDPIEYAKFMERYAVGLSI---------------------KTEEKYFNGSYEMLRKIASSVSIPILMNDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIG---------ARFISIFSMNETGEINKENQRKLISMIPSNVVKVA-GISERNEIEELRKLGVNAFLISSSLMRNPEKIKELIEGSLE............. 252
70 -12.0001igs_A mol:protein length:248 INDOLE-3-GLYCEROLPHOSPHATE SYNTHASE  ali model follow..  17  37ILEFNKRNITAIIAEYKRKSPSVERDPIEYSKFMERYAVGLSI---------------------LTEEKYFNGSYETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALRIG---------ARFIGINSRDETLEINKENQRKLISMIPSNVVKVA-GISERNEIEELRKLGVNAFLIGSSLMR........................... 238
71 -12.0001tqj_A mol:protein length:230 Ribulose-phosphate 3-epimerase  ali model follow..  16  2......SKNIVVAPSILSA--DFSRLGEEIKAVDEAGADWIHVDV------MDGRFVP-----------NITIGPLIVDAIRPLTKKTLDVHLMIVEPEKY-VEDFAKAGADIISV--NASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGG--QSFIPEVLPKIRALRQMCDPWIEVDGGLK-PNNTWQVLEAGANAIVAGSAVFN----APNYAEAIAGVRNSKRPEPQ... 226
72 -12.0003ct7_A mol:protein length:231 D-allulose-6-phosphate 3-epimerase  ali model follow..  15  6.............SLMCMDLLKFKEQIEFI----DSHADYFHIDI------MDGHFVP-----------NLTLSPFFVSQVKKLATKPLDCHLMVTRPQDY-IAQLARAGADFITLPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAG--QPFIPEMLDKLAELKAWREYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLF--NHAENIDEAWRIMTAQILAAKSEVQ 225
73 -12.0003tc6_A mol:protein length:258 Indole-3-glycerol phosphate synthase  ali model follow..  16  37ILEFNKRNITAIIAEYKRKSPSVERDPIEYAKFMERYAVGLKI---------------------LTEEKYFNGSYETLRKIASSVSIPIAMSDAIVKESQIDDAYNLGADTVVLIVKILTERELESLLEYARSYGMEPLIVINDENDLDIALRIG---------ARFIGIESRDETLEINKENQRKLISMIPSNVVKVA-GISERNEIEELRKLGVNAFLIGSSLMRNPEKIKELIEGSLE............. 252
74 -11.9001vh7_A mol:protein length:265 Imidazole glycerol phosphate synthase subunit hisF  ali model follow..  18  5.........................AKRIIACLDVKDGRVVKG-RDSGDPVELGKFYSEIGIDELASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFET--ASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVNTGILLRDWVVEVEKRGAGEILLTSI-DRDGTKSGYDTEM---IRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHF........................... 231
75 -11.9003nxf_A mol:protein length:258 Retro-Aldolase  ali model follow..  15  37ILEFNKRNITAIIATYMRKSPWVERDPIEYAKFMERYAVGLSI---------------------CTEEKYANGSYETLRKIASSVSIPILMADFIVKESQIDDAYNLGADTVPLIVKILTERELESLLEYARSYGMEPIIXINDENDLDIALRIG---------ARFIGICSRDETLEINKENQRKLISMIPSNVVKVA-GISERNEIEELRKLGVNAFSIISSLMRNPEKIKELIEGSLE............. 252
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.