Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: PF00817.20; Q74KV6_LACJO/16-168; impB/mucB/samB family, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150
# Score Template Links and tools%idFirst IDMDAFYASVEMRDNPSIRNKAVLIGGDPKKNKGHGVVATANYIARSYGAHSAMPTAKAVRLIPAEKLVIIQPNFEKYRAVSAEIHQLMHKITDRVESVALDEAYLDVTENKLNLTDPVRIAALLQERIYQRIGLTSSFGVSYNKFLAKMGSELast
1 -84.6001im4_A mol:protein length:221 DBH  ali model follow..  34  5VDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAP--SAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIAD 156
2 -79.3004qw8_A mol:protein length:349 DNA polymerase IV  ali model follow..  31  6VDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILP--NAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAAD 156
3 -78.6004f4z_B mol:protein length:361 DNA polymerase IV  ali model follow..  31  6VDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILP--NAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAAD 156
4 -78.6004gc7_A mol:protein length:359 DNA polymerase IV  ali model follow..  31  6VDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILP--NAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAAD 156
5 -78.4003qz7_A mol:protein length:360 DNA polymerase IV  ali model follow..  31  6VDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILP--NAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAAD 156
6 -78.1002asd_A mol:protein length:360 DNA polymerase IV  ali model follow..  31  14VDFDYFYAQVEEVLNPSLKGKPVVVCVFSGRFEDSGAVATANYEARKFGVKAGIPIVEAKKILP--NAVYLPMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVRDYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAAD 164
7 -77.2001k1q_A mol:protein length:354 DBH protein  ali model follow..  34  6VDFDYFFAQVEEVLNPQYKGKPLVVSVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAP--SAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIAD 157
8 -77.2004ir1_F mol:protein length:352 DNA polymerase IV  ali model follow..  43  8VDMDCFFAAVEMRDNPALRDIPIAIGGSR---ERRGVISTANYPARKFGVRSAMPTGMALKLCP--HLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASD 155
9 -76.7004f4w_A mol:protein length:361 DNA polymerase IV  ali model follow..  34  6VDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAP--SAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIAD 157
10 -76.5004f50_A mol:protein length:361 DNA polymerase IV  ali model follow..  34  6VDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAP--SAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIAD 157
11 -76.5004f4y_A mol:protein length:362 DNA polymerase IV  ali model follow..  34  6VDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAP--SAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIAD 157
12 -76.5004nlg_A mol:protein length:362 DNA polymerase IV  ali model follow..  34  6VDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAP--SAIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIAD 157
13 -75.4004dez_A mol:protein length:356 DNA polymerase IV 1  ali model follow..  32  8VDLDQFLASVELRRRPDLRGQPVIVGGSGDPSEPRKVVTCASYEAREFGVHAGMPLRAAARRCP--DATFLPSDPAAYDEASEQVMGLLRDLGHPLEVWGWDEAYLGADLPD--ESDPVEVAERIRTVVAAETGLSCSVGISDNKQRAKVATG 156
14 -65.7005kt4_A mol:protein length:445 DNA polymerase iota  ali model follow..  32  58VDLDCFYAQVEMISNPELKDKPLGVQ-------QKYLVVTCNYEAGKLGVKKLMNVRDAKEKCP--QLVLVNGDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTELHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSG 236
15 -62.7003gqc_A mol:protein length:504 DNA repair protein REV1  ali model follow..  23  149KAADIPDSSLWENPDSAQANGIDSVLS-------RAEIASCSYEARQLGIKNGMFFGHAKQLCP--NLQAVPYDFHAYKEVAQTLYETLASYTHNIEAVSCDEALVDITEIAETKLTPDEFANAVRMEIKDQTKCAASVGIGSNILLARMATR 293
16 -60.5003pzp_A mol:protein length:517 DNA polymerase kappa  ali model follow..  39  95IDMDAFYAAVEMRDNPELKDKPIAVGS-------MSMLSTSNYHARRFGVRAAMPGFIAKRLCP--QLIIVPPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSD 314
17 -60.4002r8j_A mol:protein length:554 DNA polymerase eta  ali model follow..  23  52IDMNAFFAQVEQMRCGLSKEDPVVCV-------QWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRICFILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASN 299
18 -59.9005vtp_A mol:protein length:535 DNA polymerase eta  ali model follow..  23  30IDMNAFFAQVEQMRCGLSKEDPVVCV-------QWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASN 277
19 -59.5003mfh_A mol:protein length:520 DNA polymerase eta  ali model follow..  23  36IDMNAFFAQVEQMRCGLSKEDPVVCV-------QWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVSLEPYRRESRKALAIFKWACDLVERASIDEVFLDLGRDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASN 283
20 -59.0002aq4_A mol:protein length:434 DNA repair protein REV1  ali model follow..  22  57IDFDCFFATVAYLCRSDFKRDPIVVCH----GTKNSDIASCNYVARSYGIKNGMWVSQAEKMLPNGKLISLPYTFEQFQLKSEAFYSTLKRLNNLILPISIDEAVCVRIIPDNIHNTNARLCEEIRQEIFQGTGCTVSIGCSDSLVLARLALK 218
21 -55.9003jaa_A mol:protein length:435 DNA polymerase eta  ali model follow..  33  15VDMDCFFVQVEQRQNPHLRNKPCAVVQ--YKSWKGGGIIAVSYEARAFGVTRSMWADDAKKLCPDLLLAQVRANLTKYREASVEVMEIMSRFA-VIERASIDEAYVDLTSPDLQLTVGAVIVEEMRAAIERETGFQCSAGISHNKVLAKLACG 231
22 -54.1005w2a_A mol:protein length:551 DNA polymerase kappa  ali model follow..  35  125IDMDAFYAAVEMRDNPELKDKPIAVGS-------MSMLSTSNYHARRFGVRAAMPGFIAKRLCP--QLIIVPPNFDKYRAVSKEVKEILADYDPNFQVNFEEQNNPQILQNSVVFGSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSD 344
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.