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Query: PF01810.18; RHTC_ECOLI/13-206; LysE type translocator, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst IVALMSPGPDFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAPAPQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISRLast
1 -9.8405vkv_A mol:protein length:232 Cytochrome c-type biogenesis protein CcdA  ali model follow..  16  13VLSFLSP--PLVPTYLFYLGGARGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEHRQTLARVGGVVLVLFGLYML--GLRPRWGVSLRYEGETSRPLGAFLLGATLALGTPCIGPILGAILTLTAVGGG----VGFLLAYILGLAVPFFVVALFADRIKGWLRRAGRISHYVEVLAGVVLVLVGVLLFTG. 201
2 -8.4803iyz_A mol:protein length:340 Aquaporin-4  ali model follow..  13  58IFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGVAMVCTRKSVFYITAQCLGAI----IGAGILYLVTPPSVVGGLGVTTVHGNLTAG--HGLLVELI---TFQLVFTIFASCDDKRTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMWVGPIIGAVLAGALYEYVF.. 263
3 -7.8502n4x_A mol:protein length:208 Cytochrome C-type biogenesis protein (CcdA)  ali model follow..  14  19ILSVFSP---VVPLIFAGSRGRALDAFLIVAGLTI------SMLILGYTASLFFG-----FFRVVAMLFLLIFALILLDEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFLLPAILPFAGIAISQTLLSEN----------PLVMLSYGLGMAVTIAAVFKMGEKFVKANFQLIRKVTGAIVLLYLAYFALT. 196
4 -6.7206bwj_A mol:protein length:776 Transient receptor potential cation channel subfamily V member 2  ali model follow..  10  499.........................VSSLVMGWTNLLYYTRGFQHTGIYSVMIEKVILRDLLRFL-ALVSLSREAQNSRTPAGPNATEVGQPGAGQEDEAPPY-----RSILDASLELFKFTILAFQEQLRFRGVVLLLLLAYVLLTYVLLLNMLIALMSETVNSVATDSWSIWKLQKAISVLE.......... 667
5 -6.7103jct_Z mol:protein length:136 60S ribosomal protein L27-A  ali model follow..  9  1MAKFLKAGK--VAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYVAKRTKIKPFIKVVNYNHLLPTRYTLVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKL....................................................................... 134
6 -6.6801q7t_A mol:protein length:328 hypothetical protein Rv1170  ali model follow..  11  26.LLFVHAHPD---TIAHYTSRGAQVHVVTCTGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGVSAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALIIRELRPHVVVTY.......................................................................... 155
7 -6.6706bbj_A mol:protein length:868 Transient receptor potential cation channel, subfamily V, member 4  ali model follow..  8  556..........VIITAVLYLVGIESYLAVMVFALVLGLYFTRGLKLTGTYSIMLQKILFKDLFRFLLVYLLFMIGYASVSLLNPCTSQESCIETSSNCTVPEYPSCRDSSTFSKFLLDLFKLTILEMINSAKYPAVFIILLVTYIILTFVLLLNMLIALMGETVGQVSKESKQIWKLQWATTIL........... 738
8 -6.5003j7o_Z mol:protein length:136 Ribosomal protein eL27  ali model follow..  12  1MGKFMKPGK--VVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYIAKRSKIKSFVKVYNYNHLMPTRYSVIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKL....................................................................... 134
9 -6.4905mg3_G mol:protein length:136 Protein-export membrane protein SecG  ali model follow..  18  9.....SPGPEVLLVGLIMLQQGKGADMGASFG---AGASATLFGSSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQP................................................................................................ 124
10 -6.4203j79_1 mol:protein length:146 60S ribosomal protein eL27  ali model follow..  12  1MGKLLKPGK--VIIILNGRRAGKKAVIVNTYEGQTRERPYSYCLVAGIEKHIVKRSKVKAFIKCINVNHILPTRYQVIKSLASDDVLKSKNKKKEVKKLGKIFRDKFLEPVNKKTISFLHKKL....................................................................... 144
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;