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Query: PF02424.15; C5BM31_TERTT/32-314; ApbE family, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGTEVSITFWHDDPAQAQQLLADGMAEMRRLDRELSPWIESSELATLNRLAAKAPQKISSEMLFLVDKSLYFSHLTHGAFDITFASVGWFYDYREKKQPSEAQRSALLPAINYRWLKLDKTAGTLAYAHDNVRIDLGGIAKGYAVDRVAQLLENAGVRNATISAGGDSQIVGDKRGKPWIIGIKNPRDGGKEEAEAAILLPLENTAISTSGDYERYFIDQKTGERVHHIINPRTGKSVEGVVSVTILGPRGSDTDPMSTSVFVLGVEKGLALVNSLANFECIILast
1 -91.7004ifu_A mol:protein length:340 Thiamine biosynthesis lipoprotein ApbE  ali model follow..  29  17IGTLCRVRVYSKRPAEVHAALEEVFTLLQQQEMVLSANRDDSALAALNAQAGSAPVVVDRSLYALLERALFFAEKSGGAFNPALGAVVKLWNIGFDAVPDPDALKEALTRCDFRQVHLRAAPHTVQLAQAGMQLDLGAIAKGFLADKIVQLLTAHALDSALVDLGGNIFALGLKQRLEWNVGIRDPHGTG---QKPALVVSVRDCSVVTSGAYERFF--ERDGVRYHHIIDPVTGFPAHDVDSVSIFAPRSTDADALATACFVLGYEKSCALLREFPGVDALF 312
2 -91.4003pnd_A mol:protein length:337 Thiamine biosynthesis lipoprotein ApbE  ali model follow..  28  22MGTLWRVSVVGIDAKRAAELQTKIQTQLDADDWLLSTYKNDSALMRFNHSRSLAPWPVSEAMADIVTSALRIGAKTDGAMDITVGPLVNLWGFGPDHIPTPAQIDAAKAKTGLQHLQVIDRAGHLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGIARYLVSVGGALSSRGNAQGQPWRVAIQKPTDRE---NAVQAIVDINGHGISTSGSYRNYY--ELDGKRVSHVIDPQTGRPIEHLVSVTVIAPTALEADGWDTGLMVLGTQKAQEVVRR-EGLAVFM 306
3 -90.9002o18_A mol:protein length:340 Thiamine biosynthesis lipoprotein apbE  ali model follow..  27  23MGTFWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEAMADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQIPSQEQIDAMKAKTGLQHLTVINQSHQLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSRGNGEGLPWRVAIQKPTDKE---NAVQAVVDINGHGISTSGSYRNYY--ELDGKRLSHVIDPQTGRPIEHLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRR-EGLAVYM 307
4 -88.9001vrm_A mol:protein length:325 hypothetical protein TM1553  ali model follow..  30  20LGTSVRIVVSSQKI-NPRTIAEAILEDMKRITYKFSFTDERSVVKKINDHPN-EWVEVDEETYSLIKAACAFAELTDGAFDPTVGRLLELWGFTGNRVPSREEIEEALKHTGYKNVLFDDKNMRVMV-KNGVKIDLGGIAKGYALDRARQILSFDENATGFVEAGGDVRIIGKFGKYPWVIGVKDPRG-----DDVIDYIYLKSGAVATSGDYERYF--VVDGVRYHHILDPSTGYPARGVWSVTIIAEDATTADALSTAGFVMAGKDWRKVVLDFPNMGAHL 298
5 -88.6005mgy_H mol:protein length:332 FAD:protein FMN transferase  ali model follow..  28  18MGSTYTVKYVRSGDGAKEVLHGEVEAILGQLDKQLSTYRSDSDVERFNALPAGSCEPMPDMVRELVAAGSQLSADSDGAFDLTLEPLLNLWGFGPQRVPSAEDISAARALTGQQHLSID---GDRLCKAVALQLDFNSIAAGYAVDLVIDRLKALGVQSYLVEITGELKAEGKPDGSPWRIAIEAPRDDQ---RVAQKIVELDGMGVSTSGDYRNYF--ERDGRRYSHTLDPQSGQPIEHLAAVTVIDKSTLRADGLSTALMVLGPEKGLALAER-NGIAAFF 298
6 -24.8002o34_A mol:protein length:250 Hypothetical protein  ali model follow..  14  88..........................................................................................................................RRMAHGARLVGVGPFAAVAGTIAQMVAERFVDVS-PELIVENGGDLYLYS---ERDRVVGILPDPASGDMVGILVRAGTAPVSLCGSSA-------------RIGHSLSLGDG------DLAVVRARDASLADAAATAFMLRRADDVAAVTERAAQLA... 224
7 -7.7704wa8_A mol:protein length:355 Flap endonuclease 1  ali model follow..  12  8MGLAELRELIEPEETDLRALAGREIA----IDAFNALYQFLTTIMKDGRPLMDSRGRITSHLNGLLYRTVNLVEEG--VFDGEPPDLKR--ETLERRRERKEEAMEKLRRAKTKEEREKYARQVARLDESLVEMGIPWVQAPSEGEAQCAYMARCGDVWATGSQDYDSLLFGSP----------------------RLVRNITIVGKRKHPHTGEIIEVKPEIMRLEDVLDQLGLESREQLVDLAILLG----TDYNPDGVPGIGPKRALQLIRKYGSLDELK 269
8 -6.3205t9j_A mol:protein length:506 Flap endonuclease GEN homolog 1  ali model follow..  12  3...........................VNDLWQILEPVKQHIPLRNLGGK------TIAVNLSLWVCEAQTVKKMMGSVMKPHLRNLFFVFVMEGEPPKLKADVISKRNQTRYGSSGKSWSQKTGRSHFKSVLRECLHMLECLGIEAMCAYLNAGGHVDGCLTNDGDTFLYGAQT--------------------------YRNFTMNTKDPHVDCYTMSS--------IKSKLGLDRDALVGLAILLG----CDYLPKGVPGVGKEQALKLIQILKGQSLL. 235
9 -6.3102vo1_A mol:protein length:295 CTP SYNTHASE 1  ali model follow..  21  27.......................................................................................................................................ISGIGKGIIASSVGTILKSCGLHVTSIKIDPYINI---------DAGTFSPYEHGE-----VFVLDDGGEVDLDLGNYERFLDIRLTGKIYQYVINKERGKTVQVVPHIT-QALIPVDEDGLEPQVCVIELGGTVGDIESMPFIEAF. 179
10 -6.1804uhp_A mol:protein length:136 LARGE COMPONENT OF PYOCIN AP41  ali model follow..  18  1......................................................................................................................................DEPGVATGNGQPVTGNWLAGASIPSQIAD-GKEFKSWRDFREQFWMAVSKDP--------SALENLSPSNRYFVSQGLAPYAVPEEHLGSKIHHVVPLESGGALYNIDNLVIVTPK................................. 120
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.