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Query: PF03400.13; Q32H87_SHIDS/20-150; IS1 transposase, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst VIVCAEMDEQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHYLNIKHYQLast
1 -12.7003kkr_A mol:protein length:152 Integrase  ali model follow..  14  2.......SHLWQMDNTHWNKTIIWVAVETNSGLVEAQVIEETALQVALCILQLIQRYTVLHLHSDNGPCFTAHRIENLCKYLGITKTTVERAHRDLKDRLAAYQGDCETVEAALSLALVSLN......... 128
2 -10.1005eu7_A mol:protein length:153 Integrase  ali model follow..  14  3........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKA----NPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQM............... 122
3 -10.0001biz_A mol:protein length:166 HIV-1 INTEGRASE  ali model follow..  14  7..QVDSSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKA----NPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQM............... 132
4 -10.0004pa1_A mol:protein length:151 Integrase  ali model follow..  14  3........GIWQMDCTHFDGKIILVGIHVESGYIWAQIIQETADCTVKAVLQLLSAHNVTELQTDNGPNFKNQKMEGVLNYNPQSQALVENVNHTLKVWIQKFLPETTSLDNALSLAVHSLN......... 128
5 -9.9201bis_A mol:protein length:166 HIV-1 INTEGRASE  ali model follow..  13  13........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACEWAGIKQEFIESMNKELKKIIGQVRDQAEHLKTA-------VQMAVFIHNKK 140
6 -9.7604ojr_A mol:protein length:164 HIV-1 Integrase  ali model follow..  13  11........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKA----NPQSQGVVESMNKELKKIIGQVRDQAEHLKTA-------VQMAVFIHNKK 138
7 -9.7504y1c_A mol:protein length:167 Integrase  ali model follow..  13  14........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACDWAGIKQEDIESMNKELKKIIGQVRDQAEHLKTA-------VQMAVFIHNHK 141
8 -9.7304tsx_A mol:protein length:163 Integrase  ali model follow..  15  10........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKA----NPQSQGVIESMNKELKKIIGQVRDQAETLKTAVQM............... 129
9 -9.7205jl4_A mol:protein length:163 Integrase  ali model follow..  15  10........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSNTVKA----NPQSQGVIESMNKELKKIIGQIRDQAEHLKIAVQM............... 129
10 -9.7101b92_A mol:protein length:163 PROTEIN (INTEGRASE)  ali model follow..  13  10........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKA----NPQSQAVIESMNKELKKIIGQVRDQAEHLKTA-------VQMAVFIHNKK 137
11 -9.7104e1m_A mol:protein length:166 HIV-1 Integrase  ali model follow..  13  13........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSATVKA----NPQSQGVIESMNKELKKIIGQVRDQAEHLKTA-------VQMAVFIHNKK 140
12 -9.6203av9_A mol:protein length:183 Integrase  ali model follow..  11  24........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPKTVHTDNGSNFTSTTVKAACWWAGIKQEDIESMNKELKKIIGQVRDQAEHLKTA-------VQMAVFIHNHK 151
13 -9.6004lh4_A mol:protein length:182 Integrase  ali model follow..  14  23........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKA----NPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQM............... 142
14 -9.5905oi3_A mol:protein length:182 Integrase  ali model follow..  12  23........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPKTVHTDNGSNFTSAAVKA----NPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQM............... 142
15 -9.5905hrr_A mol:protein length:164 Integrase  ali model follow..  14  11........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSNSVKA----NPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQM............... 130
16 -9.5401biu_A mol:protein length:166 HIV-1 INTEGRASE  ali model follow..  15  13........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKAACEWGGIKQEFIESMNKELKKIIGQVRDQAEHLKTAVQM............... 132
17 -9.4801k6y_A mol:protein length:212 Integrase  ali model follow..  13  59........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKA----NPQSQGVIESMNKELKKIIGQVRDQAEHLKTA-------VQMAVFIHNKK 186
18 -9.4504gvm_A mol:protein length:163 Gag-Pol polyprotein  ali model follow..  15  10........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTVHTDNGSNFTSTTVKT----NPQSQGVIESMNKELKKIIGQVRDQAEHLKTAVQM............... 129
19 -9.3804nyf_A mol:protein length:168 Integrase  ali model follow..  14  17........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACDWAGIKQEDVESMNKELKKIIGQVRDQAEHLKTAVQM............... 136
20 -9.2903zcm_A mol:protein length:167 HIV INTEGRASE  ali model follow..  13  8........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRPVKTVHTDNGSNFTSTTVKAACWWAGIKQEDIESMNKELKKIIGQVRDQAEHLKTAVQM............... 127
21 -9.2604mq3_A mol:protein length:132 Integrase  ali model follow..  12  5........GIWQMDCTHFDGKIILVGIHVESGYIWAQIIQETADCTVKAVLQLLSAHNVTELQTDNGPNFKNQKMEGVLNYNPQSQALVENVNHTLKVWIQKFLPETTSLDNA-------LSLAVHSLNKK 132
22 -9.2103f9k_A mol:protein length:210 Integrase  ali model follow..  14  60........GTWQMDCTHLEGKIIIVAVHVASGFIEAEVIQESGRQTALFLLKLASRWPITHLHTDNGANFTSQEVKMVAWWNPQSQGVVEAMNHHLKNQISRIREQANTIETIVLMAVHCMN......... 185
23 -9.1903ao2_A mol:protein length:163 POL polyprotein  ali model follow..  11  10........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRPVKTVHTDNGSNFTGATVRA----NPQSQGVIESMNKELKKIIGQVRDQAEHLKTA-------VQMAVFIHNHK 137
24 -9.1801ex4_A mol:protein length:239 INTEGRASE  ali model follow..  12  10........GIWQLDCTHLEGKVILVAVHVASGYIEAEVIAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRA----NPQSQGVVESMNKELKKIIGQVRDQAEHLKTA-------VQMAVFIHNKK 137
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.