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Query: PF05283.11; F6ZX51_ORNAN/2-123; Multi-glycosylated core protein 24 (MGC-24), sialomucin, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120
# Score Template Links and tools%idFirst ICTGQNCSACLGPSVGNSSCFWLECSGKSYCSDSPSVENCTAENKTEDCSAATTTRPSPTSSSVTTQTTPNATATPVTPSPRKSSFDAASFIGGIVLVLGVQAVVFFLYKFCKSKERNYHTLLast
1 -9.5205l74_A mol:protein length:151 Plexin-A2  ali model follow..  18  4.CSHQLCLSCVNSA----RCHWCKYRNLCTHDPTTCSFQEGRINVSEDCPQLVPTEEILIPVGEVKPITLKARNLPQPQSGQRG...................................... 84
2 -7.9705e6v_A mol:protein length:224 Integrin beta-2  ali model follow..  13  3.CKVSSCRECIESGPG---CTW--CQKLNFTGPGDPDSIRCDTRPQLLMRGCAADDIMDPTSLAETQEDHNGGQKQLSPQKVTLYLRPGQ................................ 89
3 -7.5704o64_A mol:protein length:118 Lysine-specific demethylase 2B  ali model follow..  11  14.CLRTECGECHGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVND..................................... 106
4 -7.4806elc_A mol:protein length:509 Variant surface glycoprotein  ali model follow..  7  406.......SNCNKNLKKSECKDSDGCKWNRTEETEGDFCKPKETGTENPAAGTGEGAAGANTETKKCSDKKTEGDCKDGCKWDGKECKDSSILATKKFALTVVSAAFVALLF........... 509
5 -7.4605d1k_B mol:protein length:133 E3 ubiquitin-protein ligase RNF25  ali model follow..  11  8....GQCVICLKEAFTKTPC-YIQHMEQELKAQGQEQEQERQHATTKQKAVGVQCPVCREPLVYDLASLKAAPEPQQPMELYQPSAESLR--GGII.......................... 127
6 -7.0301zw8_A mol:protein length:64 Zinc-responsive transcriptional regulator ZAP1  ali model follow..  19  3KCKWKECPESASSLFDLQRCNWEDCD................................................................................................ 47
7 -6.9806asb_C mol:protein length:123 F-box/LRR-repeat protein 19  ali model follow..  10  14ACVRTECGDC-GPGRMKQSCLLRQCTAPVLPHTAVCLLCGEAGKEDTVEGEEEKFGLSLMECTICNEIVHPGCLKMGKAEGVINAEIPNCW............................... 113
8 -6.8905b4w_A mol:protein length:579 Plexin-B1  ali model follow..  11  495.CAQLDCASCLAHR-----CGWCVLLGRCSRRSECSRGQGPEQWLWSFQPELGCLQTRENLYFQGKDGGGGGSHMGVA............................................ 570
9 -6.8402w61_A mol:protein length:555 GLYCOLIPID-ANCHORED SURFACE PROTEIN 2  ali model follow..  9  418LCSKVDCSDC-KIGANDRHCPL---DKNVYFNLESLQPLTSESICKNVFDSIRNITYNHGDYSKSNPSRSKESLNVKYPSSEERENDGTIAFKTSGFVILLISMIAAGILL........... 555
10 -6.8103nvn_B mol:protein length:476 Plexin-C1  ali model follow..  26  421.CNHKSCSECLTAT-----CGW-RCTFQGDCVHSENLEN-DISSGAKKCPGAP..................................................................... 476
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.