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Query: PF05635.11; K7WXD0_9NOST/8-110; 23S rRNA-intervening sequence protein, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# Score Template Links and tools%idFirst EDLIVWQKAHQFVLEVYQITGNFPKSEIYGLASQFRRASISIPANIAEGFKKKGDLDKVRFMNIAQASLEECRYYLILTKDLGYANTSESMLKLQEVSRLLDSLast
1 -67.8002gsc_A mol:protein length:128 Putative uncharacterized protein XCC0516  ali model follow..  35  12ERLDAWRDSMELVEMIYRLTEVFPDQERYGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVVDLVFAKLTA 117
2 -50.7002rld_A mol:protein length:121 Uncharacterized protein  ali model follow..  24  7KDNVVKDKSLEFAVRIVNLYKFLVNEQKFVMSKQILRSGTSIGANIREAEQAQSRADFINKLNIALKEANETEYWLELLIRTEYITREQYESISTEINKLLIS 113
3 -33.0004dwl_A mol:protein length:131 Bbp7  ali model follow..  13  15DQMLIVERYERVISYLYPIAQSIPRKHGV-AREMFLKCLLGQVELFIVA-GKSNQVSKLYAADAGLAMLRFWLRFLAGIQKPHAMTPHQVETAIAEVGRILGS 118
4 -6.1905vob_E mol:protein length:129 Envelope glycoprotein UL131A  ali model follow..  18  47......QTRYKYVEQLVDLTLNYHYDASHGVLKRINVTEVSLLISDFRRQNRRGGTNKRTTFN-AAGSLAPHARSLEFSVRL..................... 126
5 -6.1004eo0_A mol:protein length:115 Attachment protein G3P  ali model follow..  5  1..MDNWESITKSYYTGFAISKTVESKDKDGKPVRKEVITQADLTTACNDAKASAQNVFNQIKLTLSGTWPNSQFRLVTGDTCVYNGSPGEKTESWSIRAQVEG 101
6 -5.9905z2c_A mol:protein length:446 Alpha-protein kinase 1  ali model follow..  18  205QKLGMWYEAAELIWASIVGYLALPQPDKKGLSTSL-----GILADIFVSMSKNDYEKFKNNPQINLSLLKEFDHHLLSAAE...................... 280
7 -5.8904o7k_A mol:protein length:190 Protein osa  ali model follow..  14  77..YRAWLALGVEDSQACPLKQDMPKDRKYGIDSPVPLADVSPTMILGHFAVCFTDGMTRSMWLLAHELSRDEASAVMLAEHVGVAAPIQVSKLREQCRKIL.. 190
8 -5.7302dvy_A mol:protein length:226 Restriction endonuclease PabI  ali model follow..  11  36........................IENGVGIPVSTRKKSFPSDENLRDYY------EWQISYARDGKYDYELSRMVRLAHEHGILTYNDIYELLKFADDV... 106
9 -5.6705oon_A mol:protein length:282 Undecaprenyl-diphosphatase  ali model follow..  13  167..........................QCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAV....................................... 204
10 -5.6006cb2_A mol:protein length:293 Undecaprenyl-diphosphatase  ali model follow..  13  178..........................QCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAV....................................... 215
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;