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Query: PF05957.13; Q9HZG8_PSEAE/12-109; Bacterial protein of unknown function (DUF883 topsan), from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst DELLAEFQALVADTEKLLQSTADVAGDQAEEIRGKIHDSLKRARDTLRDTKDSLKDNVRERSQAAVDATEVYVGEHPWQSIGIAAGVGFLLGLLVSRRLast
1 -11.9001xq8_A mol:protein length:140 Alpha-synuclein  ali model follow..  13  9SKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVATVAEKTKEQVTNVGGAVVTGVTAVAQKTVE....................... 83
2 -10.6002n5e_A mol:protein length:167 Apolipoprotein A-I  ali model follow..  14  92DELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ...................... 167
3 -10.1001ya9_A mol:protein length:181 Apolipoprotein E  ali model follow..  16  100EDLRNRLGQYRNEVHTMLGQSTEEIRARLSTHLRKMRKRLMRDAEDLQKRLAVYKAGAREGAERGVSAIRERLGP....................... 174
4 -10.0003k2s_A mol:protein length:243 Apolipoprotein A-I  ali model follow..  14  168DELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ...................... 243
5 -9.8302l9q_A mol:protein length:109 12 kDa heat shock protein  ali model follow..  9  27EQGKEYITDKADKVAGKVKGVFQGVHDSAEKGKDNAEGQGESLADQARDYMGAAKSKLNDAVEYVSGRVHGEEDP....................... 106
6 -9.6801nfo_A mol:protein length:191 APOLIPOPROTEIN E2  ali model follow..  17  102ARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADALQKCLAVYQAGAREGAERGLSA....................... 176
7 -8.9402l7b_A mol:protein length:307 Apolipoprotein E  ali model follow..  13  175SAIRERLGPLVEQGRVRAATVGSLAGQPLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQ....................... 249
8 -8.8702lem_A mol:protein length:216 Apolipoprotein A-I  ali model follow..  13  90EEVKQKVQPYLDEFQKKWKEDVELYRQKASPQGAELQESARQKLQELQGRLSPVAEEFRDRMRTHVDSLRTQLAP....................... 164
9 -8.3303s84_A mol:protein length:273 Apolipoprotein A-IV  ali model follow..  12  179EELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKLGPHAGD....................... 253
10 -8.0805y5x_I mol:protein length:120 V-type ATP synthase, subunit (VAPC-THERM)  ali model follow..  20  31KQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARYRERAEAEAKAVREKAMAR------LDEAVALVLKEVL... 119
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.