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Query: PF08066.12; V2XRV5_MONRO/27-118; PMC2NT (NUC016) domain, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90
# Score Template Links and tools%idFirst KATRNSMLLPVDIPYHRSMDSEFSKELDNFSARVISLANKLLTLAGTVDASGKGKGKLQNEDDVVDNFHALVVDSMDQMLERTDICLDEIMGLast
1 -33.5004wfc_A mol:protein length:115 Exosome complex exonuclease RRP6  ali model follow..  24  19NVVRAASSLAQDVDFYKNLDRGFSKDLKSKADKLADMANEIILSIDEHHES-----FELKEEDISDLW-NNFGNIMDNLLEMSDHSLDKLNC 105
2 -25.0005c0w_K mol:protein length:695 Exosome complex exonuclease RRP6  ali model follow..  24  17NVVRAASSLAQDVDFYKNLDRGFSKDLKSKADKLADMANEIILSIDEHHES-----FELKEEDISDLW-NNFGNIMDNLLEMSDHSLDKLNC 103
3 -21.6006d6q_J mol:protein length:761 Exosome component 10  ali model follow..  25  46AVTKASGGLPDEYDFYRSF-PGFQAFCETQGDRLLQCMSRVMQYHGCRSNI----KDRSKVTELEDKF-DLLVDANDVILERVGILLDEASG 134
4 -6.6205j9q_D mol:protein length:120 Chromatin modification-related protein YNG2  ali model follow..  6  9QTIQDVSNLPSEFRYLLEEIGSNDLKLIEEKKKYEQKESQIHKFIRQQGSIPKHPQEDGLDKEIKESLLKCALFLIARHLNKLEKNIALLE. 112
5 -6.1101ykh_B mol:protein length:132 RNA polymerase II holoenzyme component SRB7  ali model follow..  10  40PQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFVG 132
6 -6.0602l7a_A mol:protein length:131 Talin-1  ali model follow..  12  41EMVRQARILAQATS--GESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQRLREAAEGLRMATNAAAQNAIKK.......... 131
7 -5.9101yke_B mol:protein length:151 RNA polymerase II holoenzyme component SRB7  ali model follow..  10  40PQMSDKHATVVPPEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFV. 130
8 -5.7205n9j_D mol:protein length:138 Mediator of RNA polymerase II transcription subunit 21  ali model follow..  12  59....................RDLAKDLVTKFMQIDTLINQLPGISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLKLQLAKRIETFG. 129
9 -5.5305apw_A mol:protein length:92 GENERAL CONTROL PROTEIN GCN4  ali model follow..  17  5..........SDYDIPTTENLYFQGHMKQLEDKVEELLSKVYHLENEVARLKKLMATKDDMKQLEDKVEELLSKVYH--LENEVARLKKLVG 84
10 -5.4503dka_A mol:protein length:155 DinB-like Protein  ali model follow..  10  18VTNELAEKISKD-HYSYKPAETSMS-AEELVKHILTSFHLFANVIKEGNASPFQNKQEETETDLNVLAKTYTEKTVAILEQLTEEQLDR... 104
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;