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Query: PF10177.9; W5KY66_ASTMX/13-159; Uncharacterised conserved protein (DUF2371 topsan), from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RQDSLRTKNRAENKRRRKARKKRKNDIVVVKGKLNLCSVSGMAAAFGVLVLMVGIAMAVLGYWPRENLAHTVSLQRVNDATINSTKPIPPASRHVGFFEDFFSNYQYSDNLKVFGPLVMGIGIFLFICANAVLHENRDKKTKIINLRLast
1 -8.1303wxx_B mol:protein length:219 AopB  ali model follow..  15  87RAENLKKIDENQTKMKEASEAADKAKKSGLASKIFGWISAIASMVIGAILIATGVGAAVGAMMIVGGAVGVANMAIQQAAA---------------------DGRISPETMKVLGPIMIAAEILVAIVSIAVTF............. 199
2 -6.9805j0g_A mol:protein length:113 OXIDOREDUCTASE,Superoxide dismutase [Cu-Zn]  ali model follow..  20  90............................................................................................................SVISLSGD-IIG--------RTLVVHEKAGA........ 113
3 -6.9104qkb_A mol:protein length:200 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial  ali model follow..  13  106..........................................................................................................HVDSIKFCGATIAGLS---LLSPSVMRLVHTQEPGEWLEL. 142
4 -6.8904p79_A mol:protein length:198 Claudin-15  ali model follow..  13  78.........................YVQGCRALMITAILLGF---LGLFLGMVGLRATNVGNMDLSKKAKLLAIAGTLHILAGACGMVAISWYAVNITTDFFNPLYAGTKYELGPALYLGSASLLSILGGICVFSKEEPATR..... 198
5 -6.8506cfw_C mol:protein length:124 Monovalent cation/H+ antiporter subunit G  ali model follow..  18  3..............................................................................................................AYYLIIAFLGISVTFNMLGSIALHRFPDVYTRL.... 35
6 -6.5901cv8_A mol:protein length:174 STAPHOPAIN  ali model follow..  26....................................................GYTMSALLNATYNTNKYHAEAVGQQFQFTGLTPREMIYFGQTQGRSPQLLNRMTTYNEVD---GIAILGGHAMAVVG----NAKLNNGQEVIIIW 140
7 -6.3505khn_B mol:protein length:883 RND transporter  ali model follow..  19  320..........................GLAMVGSLNMISVAFMVLFVGLGV---DFSIQYGVKYREERFRGEAIDAALIGAAHSMGMPLATTAVAASFFSFIPTAY---RGVSELG-LIAGVGMFVALLTTLTL.............. 421
8 -6.2603x29_A mol:protein length:185 Claudin-19  ali model follow..  12  76.........................HIQSARALMVVAVLLGF---VAMVLSVVGMKATRVGDSNPTAKSRVAISGGALFLLAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGALFVGASAGLAMLGGSFL.............. 182
9 -6.2505yi4_A mol:protein length:145 Disrupted in schizophrenia 1 homolog,Nuclear distribution protein nudE-like 1  ali model follow..  16  71...................................................................PTKEAGEASASYPTAGAQETEALVPRGSGFGTSPLTPSARISALNIVGDLLRKVGALLAACRNFA----KDQASR..... 144
10 -6.1702xw7_A mol:protein length:178 DIHYDROFOLATE REDUCTASE  ali model follow..  117.............................................................................................GGDVAAQFVAADLIDEIIVSYAPCTLGVGSRVLPMRSEWVLDDCARNGDFVCAR 170

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35