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Query: PF11166.8; Q2FYD6_STAA8/2-99; Protein of unknown function (DUF2951 topsan), from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst FGFTKRHEQDWRLTRLEENDKTMFEKFDRIEDSLRTQEKIYDKLDRNFEELRRDKEEDEKNKEKNAKNIRDIKMWILGLIGTILSTFVIALLKTIFGILast
1 -7.7504wyb_B mol:protein length:92 Bud site selection protein 6  ali model follow..  15  22.......DHDSRVEAIDKAEKMWEMERKLKASNEFDDELENFVGNSNLKKSGGFEEVERIRKQKDEANLRAY.......................... 86
2 -7.4805hyu_A mol:protein length:105 M protein, serotype 2.1  ali model follow..  27  26...........KIKNLEEEKAELFEKLDKVEEEHKKVEEEHKKDHEKLEKKSEDRQLDQEYKEERQKNLEELE......................... 95
3 -7.2603wxx_B mol:protein length:219 AopB  ali model follow..  24  61............................EIELSKMTSELEQTQKKLKLADLERIRAENLKKIDENQTKMKEAS--IFGWISAI-ASMVIGAILIATGV 141
4 -7.1805i0q_A mol:protein length:104 M protein, serotype 2.1  ali model follow..  27  26...........KIAALEEEKAELFEKLDKVEEEHKKVEEEHKKDHEKLEKKSEDRQLDQEYKEERQKNLEELE......................... 95
5 -7.0402m8r_A mol:protein length:109 Syntaxin-1A  ali model follow..  15  17......ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDERAVSDTKKAVKYQSKARRKKIMIIICCVILGIIIASTIGGIFG. 109
6 -6.9202d3e_A mol:protein length:134 General control protein GCN4 and Tropomyosin 1 alpha chain  ali model follow..  15  70..............KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH........................... 126
7 -6.5402a0l_A mol:protein length:241 Voltage-gated potassium channel  ali model follow..  12  121...........RILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVYGDVVIGIAVMLTGI 216
8 -6.2405bs7_E mol:protein length:115 Protein SPT2 homolog  ali model follow..  5  65................DYALRYMESSWKEQQKEEAKSLRLGMQEDLEEMRREEEEMQRRRAKKLKRR............................... 115
9 -6.1402ahm_E mol:protein length:203 Replicase polyprotein 1ab, heavy chain  ali model follow..  7  38.................VVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINN.... 114
10 -6.1402wwb_B mol:protein length:68 PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA  ali model follow..  18  5....................................MQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMAIGFAIMGFIGFFVKLIHIPINNIIVG. 67
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.