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Query: PF11799.8; B6QQ86_TALMQ/339-497; impB/mucB/samB family C-terminal domain, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VMEARAVPTQISIEDSYRGLEHFEDVRKQLQLLSTSLIKRMRTDLIDEEVHKDTNQEDGTRWIAHPRTLRLSTRRRSPKNADGSRDYSYANGRTSRSGPVPKYMFSLAESAEAVAEKLVDDCLVSMFRKLHPDKAFGELSLINVAVTNMVETAGDNKQSLast
1 -27.8005vtp_A mol:protein length:535 DNA polymerase eta  ali model follow..  15  387.LSSRPVVKSMMSNKNLKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNK------------IVIPRTVSISLK-------------TKSYEVYRKSGPVAYKGINFQSHE-------LLKVGIKFVTDLDKNKSYYPLTKLSMTITNFDIIDLQKTV. 516
2 -27.6002r8j_A mol:protein length:554 DNA polymerase eta  ali model follow..  15  409.LSSRPVVKSMMSNKNLKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNK------------IVIPRTVSISLK-------------TKSYEVYRKSGPVAYKGINFQSHE-------LLKVGIKFVTDLDKNKSYYPLTKLSMTITNFDIIDLQKTV. 538
3 -27.1003mfh_A mol:protein length:520 DNA polymerase eta  ali model follow..  15  393.LSSRPVVKSMMSNKNLKSCNSIVDCISWLEVFCAELTSRIQDLEQEYNK------------IVIPRTVSISLK-------------TKSYEVYRKSGPVAYKGINFQSHE-------LLKVGIKFVTDLDKNKSYYPLTKLSMTITNFDIIDLQK... 520
4 -25.7005kt4_A mol:protein length:445 DNA polymerase iota  ali model follow..  25  318.VILSGPPQSFSEEDSFKKCSSEVEAKNKIEELLASLLNRVCQD------------------GRKPHTVRLIIRRYSSEKHY---------GRESRQCPIPSHVIQKLGTGNYDVMTPMVDILMKLFRNMVNVKMPFHLTLLSVCFCNLKALNTAK... 445
5 -22.2003jaa_A mol:protein length:435 DNA polymerase eta  ali model follow..  16  313.VKPRQLPKTIGCSKNFTALATREQVQWWLLQLAQELEERLTKDRNDND--------------RVATQLVVSIRVQGDKRLS----------SLRRCCALTRY-------DAHKMSHDAFTVIKNCNTSGIQTEWSPPLTMLFLCATKFSAS....... 435
6 -18.4003pzp_A mol:protein length:517 DNA polymerase kappa  ali model follow..  11  396.LTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE------------------RLKGRTVTIKLKNVN-------------FEVKTRASTVSSVVST---------AEEIFAIAKELLKTEIDADHPLRLRLMGVRISSFPNEEDRKHQ. 514
7 -18.4005w2a_A mol:protein length:551 DNA polymerase kappa  ali model follow..  11  426.LTRDGERKSMSVERTFSEINKAEEQYSLCQELCSELAQDLQKE------------------RLKGRTVTIKLKNVN-------------FEVKTRASTVSSVVST---------AEEIFAIAKELLKTEIDADHPLRLRLMGVRISSFPNEEDRKHQ. 544
8 -15.6001unn_C mol:protein length:115 DNA POLYMERASE IV  ali model follow..  9  1..........VGVERTMEDIHHWSECEAIIERLYPELERRLAK----------------VKPDLLIARQGVKLKFDD-------------FQQTTQEHVWP-----------RLNKADLIATARKTWDERRGGR---GVRLVGLHVTLLDPQMERQ... 104
9 -12.4003gqc_A mol:protein length:504 DNA repair protein REV1  ali model follow..  12  374.VRTEKERKSVSAEINYGRFTQPKEAEAFLLSLSEEIQRRLEATGMKGKRL----------------TLKIMVRKPGAPVETAKFGGHGICDNIARTVTLDQATDN---------AKIIGKAMLNMFHTMKLNIS--DMRGVGIHVNQLVPTNLNPST. 504
10 -12.0002aq4_A mol:protein length:434 DNA repair protein REV1  ali model follow..  13  311..KEVLQRKSLSIDINWGRFKNITQVDLFIERGCQYLLEKLNEINKTTSQI----------------TLKLMRRCKDAPIEPPKYMGMGRCDSFSRSSRLGIPTNE---------FGIIATEMKSLYRTLGCPPM--ELRGLALQFNKLVDV....... 434
11 -11.6004dez_A mol:protein length:356 DNA polymerase IV 1  ali model follow..  10  237VSSEPWVPRSRSHVVTFQDLTERREMDSAVRDLALQTLAEIVEQ------------------GRIVTRVAVTVRTST-------------FYTRTKIRKLPAPS---------TDAGQIVDTALAVLDQFELDR---PVRLLGVRLELAMDDVPRPA.. 351
12 -11.1004ir1_F mol:protein length:352 DNA polymerase IV  ali model follow..  8  235.VNSERLRKSVGVERTMEDIHHWSECEAIIERLYPELERRLAK----------------VKPDLLIARQGVKLKFDD-------------FQQTTQEHVWPRL-----------NKADLIATARKTWDERRGGR---GVRLVGLHVTLLDPQMERQ... 347
13 -11.1004f4y_A mol:protein length:362 DNA polymerase IV  ali model follow..  8  243.......RKSIGRYLTLYNTRDVKVILPYLKKAINEAYNKVN---------------------GIPMRITVIAIMED-------------LDILSKGKKFKHGI----------SIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIINKTNLSD. 350
14 -11.1004nlg_A mol:protein length:362 DNA polymerase IV  ali model follow..  7  243.......RKSHGRYLTLYNTRDVKVILPYLKKAINEAYNKVN---------------------GIPMRITVIAIMED-------------LDILSKGKKFKHGI----------SIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIINKTNLSD. 350
15 -10.8004f4z_B mol:protein length:361 DNA polymerase IV  ali model follow..  8  242.......RKSIGRYLTLYNTRDVKVILPYLKKAINEAYNKVN---------------------GIPMRITVIAIMED-------------LDILSKGKKFKHGI----------SIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIINKTNL... 347
16 -10.1001k1q_A mol:protein length:354 DBH protein  ali model follow..  7  243.......KIPHGRYLTLYNTRDVKVILPYLKKAINEAYNKV---------------------NGIPMRITVIAIMED-------------LDILSKGKKFKHGI----------SIDNAYKVAEDLLRELLVRDKRRNVRRIGVKLDNIIINKTNLSD. 350
17 -9.7404gc7_A mol:protein length:359 DNA polymerase IV  ali model follow..  14  242.......RKSIGRIVTMRNSRNLEEIKPYLFRAIEESYYKLD--------------------KRIPKAIHVVAVTED-------------LDIVSRGRTFPHGI---------SKETAYSESVKLLQKILEEDERK--IRRIGVRFSKFIEAIGLDK.. 348
18 -9.7103qz7_A mol:protein length:360 DNA polymerase IV  ali model follow..  14  242.......RKSIGRIVTMRNSRNLEEIKPYLFRAIEESYYKLD--------------------KRIPKAIHVVAVTED-------------LDIVSRGRTFPHGI---------SKETAYSESVKLLQKILEEDERK--IRRIGVRFSKFIEAIGLDK.. 348
19 -9.6904qw8_A mol:protein length:349 DNA polymerase IV  ali model follow..  12  242.......RKSIGRIVTMRNSRNLEEIKPYLFRAIEESYYKLD--------------------KRIPKAIHVVAVTED-------------LDIVSRGRTFPHGI---------SKETAYSESVKLLQKILEEDERK--IRRIGVRFSKFIL........ 342
20 -9.6602asd_A mol:protein length:360 DNA polymerase IV  ali model follow..  14  250.......RKSIGRIVTMRNSRNLEEIKPYLFRAIEESYYKLD--------------------KRIPKAIHVVAVTED-------------LDIVSRGRTFPHGI---------SKETAYSESVKLLQKILEEDERK--IRRIGVRFSKFIEAIGLDK.. 356
21 -9.6204f4w_A mol:protein length:361 DNA polymerase IV  ali model follow..  14  243.......RKSIGRIVTMRNSRNLEEIKPYLFRAIEESYYKLD--------------------KRIPKAIHVVAVTED-------------LDIVSRGRTFPHGI---------SKETAYSESVKLLQKILEEDERK--IRRIGVRFSKFIEAIGLDK.. 349
22 -9.3104f50_A mol:protein length:361 DNA polymerase IV  ali model follow..  14  243.......KIPHGRIVTMRNSRNLEEIKPYLFRAIEESYYKLDK--------------------RIPKAIHVVAVTED-------------LDIVSRGRTFPHGI---------SKETAYSESVKLLQKILEEDERK--IRRIGVRFSKFIEAIGLDK.. 349
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.