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Query: PF15919.5; E1VAV2_HALED/3-129; HicB_like antitoxin of bacterial toxin-antitoxin system, from PfamA32U

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YPIAIEIADEQHAYSVVVPDLPGCFSAGDTFDEAVANAREAIEGHLESLSDHGDPIPKTTTIEQHLENPDYKGWVWATVEVDITPYLGKSHKINVTLPELLIKRIDTAVAKQGDVYQSRSGFLSRAALast
1 -69.2004p78_A mol:protein length:143 HicB3 antitoxin  ali model follow..  32  3YPIFIF--KTVEGFDGYFPDIDGCFFAGNTFADISKNAEEAFAVHIEALMNEGFPLPSPPKDPHRYIDDKEEGGILGFVEIDPAKYESKAVKFNLTMSQNLLTAIDKFIATNRGY-KNRSQFLAELA 129
2 -59.1005yrz_A mol:protein length:152 HicB  ali model follow..  20  7YPALFYYDDTDATYFVHFPDFEYSATQGEGISEALAMGSEWLGITVADLIESDGELPQPSDINSLSLIDDKSFISMVSVDVSEYLGSQEPIKKTLTIPKWA----DKLGREMGLN---FSQTLTDAI 145
3 -42.2003kwr_A mol:protein length:97 Putative RNA-binding protein  ali model follow..  20  11YPAIFR--DEGTYWDVRFPDVPAAQTFGASVQVAADNAANALAIALF-----EQSLPPASDPQYWRLASTEFVVWITMADVQFGPGADTPEPMN................................. 97
4 -39.1002dsy_A mol:protein length:87 Hypothetical protein TTHA0281  ali model follow..  25  18..ARYELIADEEPYYGEIPDLPGVWATGKSLKECEANLQAALEDWLLFLLSRGETPPPLGEVRIELPHGEAA....................................................... 87
5 -33.6002yzt_A mol:protein length:67 Putative uncharacterized protein TTHA1756  ali model follow..  26  5YRVVVER-DEEGYFVAHVPELHAH-TQAQSFEELLRRLQEAIAVSLEEERAEVVGLEGALEIE................................................................ 65
6 -25.8001wv8_A mol:protein length:73 hypothetical protein TTHA1013  ali model follow..  19  4LKVQALWDGEAGVWVAESDDVPGLATEAATLEELLAKLAVMVPELLE................................................................................ 50
7 -15.3002wvb_A mol:protein length:148 PUTATIVE NICKEL-RESPONSIVE REGULATOR  ali model follow..  24  1................................................................................MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNG--YSSRSELVRDMI 45
8 -15.2002wvc_A mol:protein length:148 PUTATIVE NICKEL-RESPONSIVE REGULATOR  ali model follow..  24  1................................................................................MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNG--YSSRSELVRDMI 45
9 -15.1002ca9_A mol:protein length:148 PUTATIVE NICKEL-RESPONSIVE REGULATOR  ali model follow..  24  1................................................................................MDTPNKDDSIIRFSVSLQQNLLDELDNRIIKNG--YSSRSELVRDMI 45
10 -14.9002bj1_A mol:protein length:138 NICKEL RESPONSIVE REGULATOR  ali model follow..  18  2........................................................................................ELIRFSISIPSKLLEKFDQIIEEIG--YENRSEAIRDLI 38
11 -14.5004me7_E mol:protein length:94 Antitoxin EndoAI  ali model follow..  23  5......................................................................................SSARTEMKISLPENLVAELDGVAMREK---RSRNELISQAV 42
12 -13.9001q5v_A mol:protein length:133 Nickel responsive regulator  ali model follow..  22  2..........................................................................................QRVTITLDDDLLETLDSLSQRRG--YNNRSEAIRDIL 36
13 -13.3002cpg_A mol:protein length:45 TRANSCRIPTIONAL REPRESSOR COPG  ali model follow..  22  2.........................................................................................KKRLTITLSESVLENLEKMAREMGL---SKSAMISVAL 36
14 -13.2003k6q_A mol:protein length:139 Putative ligand binding protein  ali model follow..  11  51LKIHAELSKEDGIIIGTIDGFD-LVVSGESEQEVIQKLAEDLLEYAQDYMND........................................................................... 101
15 -11.8001b01_A mol:protein length:45 TRANSCRIPTIONAL REPRESSOR COPG  ali model follow..  22  2.........................................................................................KKRLTITLSESVLENLEKMAREMGL---SKSAMISVAL 36
16 -9.9802k5j_A mol:protein length:80 uncharacterized protein yiiF  ali model follow..  22  8........................................................................................DMGRILLDLSNEVIKQLDDLEVQRNL---PRADLLREAV 43
17 -9.0105x3t_A mol:protein length:71 Antitoxin VapB26  ali model follow..  23  2..........................................................................................DKTTVYLPDELKAAVKRAARQRGV---SEAQVIRESI 35
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.