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Query: PF00015.21; MCPC_SALTY/326-483; Methyl-accepting chemotaxis protein (MCP) signalling domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTLast
1 -90.100PF00015.21; MCPC_SALTY/326-483; Methyl-accepting chemotaxis protein (MCP) signalling domain  ali  100  1TGLAKTASETARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTRVTDIMGEIASASDEQSKGIEQVAQAVSEMDSVT 158
2 -46.400PF03532.13; O50963_BORBU/3-255; OMS28 porin  ali follow..  16  51...KDQVNQALDTINKVTEDVSSKLEGVRESVKKFVGSMSLMSDVAKGTVVASQEATIVAKCSGMVAEGANKVVEMSKKAVQETQKAVSVAGEATKEEFAKVEQVKETLMASERALDETVQEAQKVLNMVNGLNPSNKDQVLAKKDVAKAISNVVKVA 238
3 -11.600PF09599.10; Q7NUS9_CHRVO/2-343; Salmonella-Shigella invasin protein C (IpaC_SipC)  ali follow..  17  194.............................................AARPEVAELSAQPNAAASVADGMAGDKLQSSNSKLARQHEAALGSSTEDLTAKSQAEQLAMDDTKLKAQAKQTTGKAIMDSSAAAGNIAGGSGRYAATLEQSEQQISQASS.. 306
4 -8.240PF05928.11; Q94KM1_MAIZE/1-207; Zea mays MURB-like protein (MuDR)  ali follow..  20  12........................................................AVEAARAA------AVAASEAR-VAEKEAKAAVQFAAIVVDKVEAVKASSNV--NIKNSLRYAIQEMRRQYKLLHSVQKSTIPEVQG-GKIGKVRGHLEHV. 117
5 -6.570PF03915.13; G4UU16_NEUT9/619-1087; Actin interacting protein 3  ali follow..  10  245............................DWLVNKVDDLQDLIEDL--RKDVVHRGVRPRPNQLESVTKDITTLTKELKKMEEFMKKEKPIWTKIWEKELEEVCQGRDELRLMEDLMIDLRDDLEKASETFALVEQATKEQMK................ 356
6 -6.390PF11053.8; Q6WHF0_BPKVM/3-151; Terminase DNA packaging enzyme  ali follow..  17  65....................................................AALKAFENASMSDAPRMMEVFATLMTQMTNNNKQILKQMKDITQQEIASPQGGGGGTVQSINAETAVF--VGNARDLLNEV......................... 146
7 -6.350PF00255.19; GPX3_YEAST/4-111; Glutathione peroxidase  ali follow..  12  15..........................PFDQLKGKVVLIVNVASKCGFTPQYKELEALYKRYK----DEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLK.................................. 108
8 -5.990PF06009.12; LAMA_DROME/2566-2700; Laminin Domain II  ali follow..  12  1.......................................................SNANASDALEILKNVLEILEPVSVQTPKELEKAHGINRDLDLTNKDVSQANKQLDDVEGSVSKLNELAEDIEEQQHRVGSQSRQLGQEIENLKAQVEA..... 98
9 -5.930PF00435.21; SPTA1_HUMAN/687-791; Spectrin repeat  ali follow..  10  6..............................................FENNAEDLQRWLEDVEWQVTSEDYGKGLAEVQNRLRKHGLLESAVAARQDQVDILTDLAAYFEEIGHPDSKDIRARQESLVCRFEALKEPLATRKKKLLD............ 105
10 -5.850PF11328.8; Q8YAI8_LISMO/1-90; Protein of unknown function (DUF3130 topsan  ali follow..  2..........................................................................SEIKVKEATLAKYATKLESKGKSTEYLPMKGGNMSYSQANSINHFRTALFDLVDAVDNFQGVVGTDAKRLKELGASFTRKDQ.. 83

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24