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Query: PF00073.20; POLG_CXB4J/358-524; picornavirus capsid protein, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst FDVTPEMNIPGQVRNLMEIAEVDSVVPINNLKANLMTMEAYRVQVRSTDEMGGQIFGFPLQPGASSVLQRTLLGEILNYYTHWSGSLKLTFVFCGSAMATGKFLLAYSPPGAGAPDSRKNAMLGTHVIWDVGLQSSCVLCVPWISQTHYRYVVDDKYTASGFISCWYLast
1 -86.400PF00073.20; POLG_CXB4J/358-524; picornavirus capsid protein  ali  100  1FDVTPEMNIPGQVRNLMEIAEVDSVVPINNLKANLMTMEAYRVQVRSTDEMGGQIFGFPLQPGASSVLQRTLLGEILNYYTHWSGSLKLTFVFCGSAMATGKFLLAYSPPGAGAPDSRKNAMLGTHVIWDVGLQSSCVLCVPWISQTHYRYVVDDKYTASGFISCWY 167
2 -54.900PF12264.8; O11979_9SECO/708-904; Waikavirus capsid protein 1  ali follow..  9  1...........EQAFQDEEKRTVDPNISDMYNAIKSEYLVKSFSWKVSDGQDKVLSNINIPEDLWN--TNSRLNDIMSYFQYYKATLTFRISTTCIPMHGGTLFAAWDACGCATRQTAVQLTGLPGIMIEAHSSSLTTFSVEDPLTQSTVCLSGSEHSRIGILKIC. 159
3 -54.400PF00915.20; CAPSD_FCVUR/112-395; Calicivirus coat protein  ali follow..  19  24.QGTVVGGVIAEPSSQMSTAADMASGKSVDSEWEAFFSFHTSVNWSTSETQGKILFKQSLGPLL-----NPYLEHLSKLYVAWSGSVEVRFSISGSGVFGGKLAAIVVPPGVD-PIQSTSMLQYPHVLFDARQVEPVIFTIPDLRSTLYHLMSDTD---TTSLVIMV 180
4 -39.900PF03391.15; Q67703_GFLV/166-336; Nepovirus coat protein, central domain  ali follow..  7  6..........................DPGVFNGKFQFLTCPPIFFDLTAVTALKSAGLTLGQVPMVGTTRNLNSTLVSCVLGMGGTIRGKVHICAPIFYSIVLWVVSEWNGTTM--DWNELFKYPGVYVEEDGSSEVKIRSPYHRTPARLLAGQSQ-RDMSSLNFY. 144
5 -37.800PF12944.7; POLG_HAVHM/549-716; Hepatitis A virus viral protein VP  ali follow..  12  1..PVLAKKVPETFPELKPGESRHTSDHMSIYKFMGRSHFLCTFTFNSNNKEYTFPITLSST-SNPPHGLPSTLRWFFNLFQLYRGPLDLTIIITGATDV--DGMAWFTPVGLAVDTSIDYKTALGAVRFNTRRTGNIQIRLPWYSYLYAVSGALDGLGD........ 163
6 -31.800PF08762.10; O56051_9VIRU/590-790; CRPV capsid protein like  ali follow..  7  10.......................GEKVTSFRQLIKRFSAITPPTQNRYWEFTQPFWINTNRLEGVTQSDIDGISWFASLYAFYRGSMRYKIAPLSNASPLVVALKPNSLYSGDTNGTWTYPDYKGAEVFMTPNEGIHELSIPYYSSYPVTLTTYNSTDS........ 152
7 -21.500PF02247.16; POL2_CPMVS/460-832; Large coat protein  ali follow..  9  197.......................................MGKLTFPQGVTSEVRRMPLSIGGGAGATQAFNMPNSWISMWRYFRGELHFEVTKMSSPYIKATVTFLIAFGNLSD--AFGFYESFPHRIVQFAEEEKCTLVFSQQEFVTAWSTQVNPRTTLEADGCPY 325
8 -19.300PF11729.8; CAPSD_SJNNV/1-340; nodavirus capsid protein  ali follow..  10  70.............................................AGTGTDGKIVVDSTIVPELL-----PRLGHAARIFQRYA-TLEFEIQPMCPANTGGGYVAGFLPDPTDNDHTFDALQATRGAV-VAKWWESRTVRPQYTRTLLWTSTGKERLTSPGRLVL.. 185
9 -19.000PF00729.18; CAPSD_TBSVC/76-269; Viral coat protein (S domain)  ali follow..  12  2....GAIMAPVAVTRQLVGSKPKFTGRTSGSVTVTHREYLSQVNNSTGFQVNGVGNLLQLNPLNGTLF--SWLPAIASNFDQYT-SVVLHYVPLCSTTEVGRVAIYFDKDSEDPEPADRVELANYSVLKETAPWAEAMLRVPTDKIKRFCDDSSTSTNAVGDIFISY 184
10 -12.100PF03014.14; F5BB18_9VIRU/7-634; Structural protein 2  ali follow..  12  2........VPSAQSKPRRTRRPKMDPSQIPDTVKTFRLTTDPIMAPPPGEIDSLLYTSGLSPAVVLSFSSSPAVVFAANYEKYK-SFKATVLLAPEAISSYNLSVVWFPDASEGPTSLQATNLSMVR-HSILPGQSGSLSLTYVDPTH----SDALSAFCGLFMV.. 170
11 -9.650PF03115.14; CAPSD_HASV1/17-416; Astrovirus capsid protein precursor  ali follow..  13  78.............................................SNTSGTTEIEACILLNPVLVKDATGGPVQALGAQYSMWK-YLNVKLTMVGASAVNGTVSVSLNPTTTPTSTSWSGLGARKHLDVTVGKNATFKLKPSDLGGPR--TNDNASDTLGPSIEIH. 210
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.