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Query: PF00208.21; DHE3_ORYSJ/176-408; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GGSLGRDAATGRGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAAEVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEEKVNRELQKYMKNAFQNIKDMCKSQNCNLRMGAFTLGVNRVAKATLLRGLast
1 -98.400PF00208.21; DHE3_ORYSJ/176-408; Glutamate/Leucine/Phenylalanine/Valine dehydrogenase  ali  100  1GGSLGRDAATGRGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSGIDIPALLKHRSEGGSLEDFYGAEVMDAAELLVHECDVLVPCALGGVLNRENAAEVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNIQGFMWDEEKVNRELQKYMKNAFQNIKDMCKSQNCNLRMGAFTLGVNRVAKATLLRG 233
2 -20.900PF05088.12; A4XWG7_PSEMY/77-1608; Bacterial NAD-glutamate dehydrogenase  ali follow..  17  868GGSAGGMGITAKGGWVSVQRHFRERGIDVQKDNVTVIGIGDMAGDVFGMLLSDKLQLVAAFNHMHIFIDPNPDAAKSFAERKRLFDLPRSSIAADKLAPTELLNAGIGTYVKSSKENDALRVDGRELRAKVVGEGGNLGMTQLGRVEFGLHGGASNTDFIDNAGGVDCSDHELGEIVSGGDMTEKQRNKLLAEMTDDVSELVLGNNYKQTQALRARERVGEYKRLMNALESAG 1172
3 -15.300PF00670.21; SAHH_DICDI/191-351; S-adenosyl-L-homocysteine hydrolase, NAD binding domain  ali follow..  11  4........GCRESL---IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLSKMGARVL-------------------VTEIDPINALQACMDGYQIVTMETAAPLSNIFVTTTGCRDIVRGEHFAVMKEDIVCNIGHFDCEIDVAWL...................................................................................... 121
4 -10.500PF01262.21; Q9S227_STRCO/141-353; Alanine dehydrogenase/PNT, C-terminal domain  ali follow..  22  25...........................GVLAGRAVVIGGGVSGWNAAQIAIGLGFHVTLLDKDITKLREADKIFGTKIQTVVSNAFELEKACL------------EADLVIGAV-----------------LIPGAKAPKLVTNELVSRMKPGSVLVDIAIDQGGCF.................................................................. 135
5 -9.860PF10727.9; Q743Y6_MYCPA/8-128; Rossmann-like domain  ali follow..  12  3.............................ARLKVGIISAGRVGTALGVALERADHVVVACSAIS-----------------HASRQRAQRRLPDTPVATPPEVAAGAELLLLAVPDSELAGAATEAVRAGTIVAHTSGANGVGILAPLTRQGCIP.............................................................................. 116
6 -9.480PF05221.17; D9SB20_FIBSS/15-498; S-adenosyl-L-homocysteine hydrolase  ali follow..  13  242................LIDGINRATDVMMAGKIAVVCGYGDVGKGCAQSLRGQGARVIITEIDPICALQAEGYEVKTLDEVVSYADIFVTTTGNTGIISAAQMEKMKNRAIVGNIGHFDNEIDMAGLKK--IPGIKRNEIKPQYDEWIFADGHSI---LVLAEGRLL--------NLGCATGHPSFVMSASFTNQTIAQIDLWLNAQGKDTVAGIKYESGVVYTLPKILDEK. 446
7 -9.070PF02558.16; Q9K9R6_BACHD/6-154; Ketopantoate reductase PanE/ApbA  ali follow..  11  1.................................VAVIGSGSIGLLLYAYLKLANWPALLVTNRPEQALNKEGLTFVAK-------SGEHQPISVTATPLSSFSAEEAEVGFITVKSFAVKAPQLQRKKWDGLVFFQNGMTHLEILRQIPARAICCGDVRVQHTG..................................................................... 138
8 -9.030PF00056.23; MDH_CHLAA/3-142; lactate/malate dehydrogenase, NAD binding domain  ali follow..  12  1...............................KKISIIGAGFVGSTTAHWLAAKELGDIVLLDFVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDV------IVVTSGAPRKPGMSREDLINADITRACISQPLSPNAVIIMVNNPLDAMTYLAAEVSGF................................................................... 133
9 -9.000PF02254.18; Q92CZ9_LISMO/5-120; TrkA-N domain  ali follow..  16  1.................................FAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSIATHAVIANSTDENAL-----------RQLGIRNFEHVIVAIGEDILTTLILKEMGVKYVTAKAT---NDKHAKLLDKIGAVVHP............................................................................ 116
10 -8.810PF06690.11; D7DUD4_METV3/2-259; Protein of unknown function (DUF1188 topsan)  ali follow..  10  30...................NAIKYYLEGEEFEQAIIFGAYLSGNYIANTLKADCGEVILI-DSQPHLEDIVTGNGIKFMDLNTFMLKLRNNKDKE---------INPDLIIDVTGLGGVDPNMLKDFDPKVLI--IEDPKSSFDKELMEADNTHKRLCVGHKKGSKISKTSGTMTLTVDVIMDSCIEIKELDGVLYSVPNLEYFEG........................... 211

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.