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Query: PF00362.18; F4W856_ACREC/136-384; Integrin beta chain VWA domain, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AEDYPVDLYYLMDLSASMEPYRDKLSKLGLQLAKAMQKLTSNFRIGFGSFVDKVVLPMTSTQPDKLESPCILKTGRPCAPPYDYKNQMPLTENVALFEDQVQAAPVSGNLDGPEGGLDAMMQVIVCTKEIGWRQKARHLIVFSTDAIFHIAGDGKLAGIVEPNDCKCHLDENGFYTYSLLQDYPSISQLNRKAREHNMNIIFAVPDHKNATYQRLSRSISGSSTGTLENDSQNVVALVSSEYEKLVDSVLast
1 -109.000PF00362.18; F4W856_ACREC/136-384; Integrin beta chain VWA domain  ali  100  1AEDYPVDLYYLMDLSASMEPYRDKLSKLGLQLAKAMQKLTSNFRIGFGSFVDKVVLPMTSTQPDKLESPCILKTGRPCAPPYDYKNQMPLTENVALFEDQVQAAPVSGNLDGPEGGLDAMMQVIVCTKEIGWRQKARHLIVFSTDAIFHIAGDGKLAGIVEPNDCKCHLDENGFYTYSLLQDYPSISQLNRKAREHNMNIIFAVPDHKNATYQRLSRSISGSSTGTLENDSQNVVALVSSEYEKLVDSV 249
2 -40.600PF11265.8; T1HXT8_RHOPR/7-220; Mediator complex subunit 25 von Willebrand factor type A  ali follow..  6.....ADVIFIIEGTAINGAYLNDIKTNYIIPTRDYVCESTSALYGIVVYHAADRL------------------------PSPSTDIYGPYSNPHKVLQMLDKIELVGGRGESHANVAEGLASSDLQQRREPGLAPQRHCILISNSPPYMM----------------------PVVENQAFTGNTAEQLASLLNENINVHLSILSPRKIPAMFKLFEKAGGDLSASYAKDPRHLVLL............ 211
3 -33.600PF17643.1; A0A127V811_9SPHI/30-773; Type VI secretion system, TssR  ali follow..  290KNIHQINVIFVVDGGSPMSRYFSGLTNTIQSFENIFNDYGKKVSYGAVVYRNEAAG---------------------------TLSTPSISPDYRKLMSFLSTTERYNGRIVAEPVFDGVRAGL---NMLKNHKNETNLIVLIGSTGNETSSA------------------------------YRLTQLTEEFARADARLLAIQLYSD-----------YDQLFNNFVLQSKKLVSESAVYSADKKKRF 473
4 -21.000PF00092.28; ITAE_HUMAN/202-381; von Willebrand factor type A domain  ali follow..  13  1......EIAIILDGSGSIDPDFQRAKDFISNMMRNFYEKCFECNFALVQYGGVIQTEF----------------------------DLRDSQDVMASLARVQNITQVGSVTKTASAMQHVLDSIFTSSH-GSRRKASKVMVVLTDGGIFED.................................................................................................. 117
5 -18.100PF13519.6; F6TCI5_CIOIN/52-161; von Willebrand factor type A domain  ali follow..  17  1.......YVLVIDVSGSMDSVMQRMKTFARLFINKAA---TYSWLGIVAFSNDAHVVLRLTQMN--------------------------KQGKEKATRAVQTLRTEGLTNISAGLFLAL-------DLIKDRSHSRDSIILFTDG....................................................................................................... 109
6 -16.600PF13768.6; Q4DUX7_TRYCC/294-460; von Willebrand factor type A domain  ali follow..  10  2......ELVLVVDSHSRQSC-----EAMANGILVGMRGLPESVFLNVVVVGAKKDVSPWQCGAVALCDV---------------------LEQVFAFIAESKPQEANSGASNLHRTLREVMSQEALSLCGSVPTGYVRHVIVMSDE....................................................................................................... 116
7 -16.400PF11775.8; Q89XX7_BRADU/399-617; Cobalamin biosynthesis protein CobT VWA domain  ali follow..  11  8ATFRDTVVTLLLDNSGSMRGRITVAATCADILARTLERC--GVKVEILGFTTRAWKGGQSREAWLAAGKPANPGRLNDLRHIIYKSADAPWRRARKNLGLMMREGLLKENIDGEALDWAHKRLLG-------RPEQRKILMMISDGAPVDDS-------------------TLSVNAGNYLERHLRHIIEEIETRSPVELIAIGIGHDVTRYYRRAVTI---------VDAEELGGAITEKLAELFSE. 219
8 -15.200PF10138.9; C0ZP81_RHOE4/217-419; vWA found in TerF C terminus  ali follow..  11  3......RVVLVIDKTGSMAKQ-RVVHRVVERMVPVAIQLDDDGKLEPYLYAVSFVK----------------------------LPEISVHDAEEWSDTYLHLRGSHGGFNYDKIGAANEVPIMTEILSDLTRSSAPTLVLFFTDGGFSERKE................................................................................................ 124
9 -14.900PF06707.11; A0NLP5_LABAI/9-208; Protein of unknown function (DUF1194 topsan)  ali follow..  11  4.....LSLVLAMDGSASVDAR-GLADALTDPEVVQAIEAVGGIWVTSFEWSGRYQQLLQ--------------------------SHLNDAQSAAKAAEILRRAPRGYTEFPT-ALGYALGHASTLMRKAP-VPCGRKVVDVAGDGINNDG--------------------------------FGPDSAYRAFDFKEITVNGLVISGADQTPVRYYRTHVIKGPGAFVEVAASYDDYAEAMKRKLLREI 196
10 -12.700PF03731.15; KU70_ARATH/30-267; Ku70/Ku80 N-terminal alpha/beta domain  ali follow..  10  2.......VVYLIDASPKMESHFHIAVSCIAQSLKAHIINRSNDEIAICFFNTREKKNLQDLNGVYVFN-----------DRPTARLIKEFDLIEESFDKEIGSQTGIVSDSRENSLYSALWVAQALLRKGSLKTADKRMFLFTNEDDPFGSMR----------------------ISVKEDMTRTTLQRAKDAQDLGISIELLPLSQPDKQFN--ITLFYKDLIGLNSDELTEFMPSVGQKLEDMKDQL 228
11 -12.700PF04056.14; SSL1_YEAST/129-325; Ssl1-like  ali follow..  1..........TLDCSEAMLEKHAMIIQYAIDFVHEFFDQNPISQMGIIIMRNGLAQ-----------------------------LVSQVSGNPQDHIDALKSIRKQEPKGNP-SLQNALEMARGLLLPV--PAHCTREVLIVFGSL-------------------------------STTDPGDIHQTIDSLVSEKIRVKVLGLSAQVAICKELCKATNYGDESFYKIDETHLKELFNEAVT...... 178
12 -11.600PF09967.9; A8LP31_DINSH/298-423; VWA-like domain (DUF2201 topsan)  ali follow..  13  1.......IVLAIDSSGSVTG--DQLAHFAAQIARIGRRVLAEIHV-----------------------------------DETVQSAHKMRGTHWAATLAGWDFARDGGTSFVDVLERA-------------AALTPSAVVVLTDL....................................................................................................... 92
13 -11.300PF04811.15; Q19371_CAEEL/531-773; Sec23/Sec24 trunk domain  ali follow..  12  3....EPAFIFMIDVSGMLPILCQNLEKVLRNLPRESGQLESSMRIGLATF-DQAVHFFDISSASPKMLVMSDVQEPFVPMVDGL--LLPYNEALPGLRAALAEIKLFSQSKTTETILQPVVQAGL--DALKCADRAGKVILFSTVLPTYDAPG------KLKSKNDRSLLGTDKEKNALVPQEDSYTKLGEQCVKSGVTVDLFLFPNAFIDVATIGQLSAVTGGSIFKFQYFSADKDGVRMLNELERHV 243
14 -10.300PF04285.12; D3RVW4_ALLVD/3-421; Protein of unknown function (DUF444 topsan)  ali follow..  10  242EPTSKAVMLCIMDVSGSMDQEKSLAKRFFILLYLFLKRNYDRIEVVFIRHH---------------------------------------TIAQEVDEEDFFYSRETGG----TVVSSALNLAYDVVKERYDPSVWNIYTAQASDGD-NWDSDSSLCRDLLIEKLMPLMRYYAYVEITPRQHQSLWYAYEEVMAAHPHFAMQEI------------------------DGAEDIYPVFRELFKR..... 418
15 -9.130PF05762.14; Q98NL4_RHILO/172-392; VWA domain containing CoxE-like protein  ali follow..  12  54.REVHPPLVVLADISGSMSQYTRIFLHFLHALTEKRR------RVHTFVFGTRLTNLTRQMRHRDPDAALADCSAAVKDWSGGTRIGDTLAEFNLAWSRRVLGLLITDGLERVAGLSQEMERLHKSCRRLIW..................................................................................................................... 185

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.