current user: public

If you have questions about the server, please let us know.

Query: PF00483.23; GLGC_SYNY3/15-285; Nucleotidyl transferase, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270
# Score Template Links and tools%idFirst LAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEIVKIYVLTQFNSASLNRHISRAYNFSGFQEGFVEVLAAQQTKDNPDWFQGTADAVRQYLWLFREWDVDEYLILSGDHLYRMDYAQFVKRHRETNADITLSVVPVDDRKAPELGLMKIDAQGRITDFSEKPQGEALRAMQVDTSVLGLSAEKAKLNPYIASMGIYVFKKEVLHNLLEKYEGATDFGKEIIPDSASDHNLQAYLFDDYWEDIGTIEAFYEANLALTKQLast
1 -114.000PF00483.23; GLGC_SYNY3/15-285; Nucleotidyl transferase  ali  100  1LAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPVSNCINSEIVKIYVLTQFNSASLNRHISRAYNFSGFQEGFVEVLAAQQTKDNPDWFQGTADAVRQYLWLFREWDVDEYLILSGDHLYRMDYAQFVKRHRETNADITLSVVPVDDRKAPELGLMKIDAQGRITDFSEKPQGEALRAMQVDTSVLGLSAEKAKLNPYIASMGIYVFKKEVLHNLLEKYEGATDFGKEIIPDSASDHNLQAYLFDDYWEDIGTIEAFYEANLALTKQ 271
2 -17.700PF07959.12; W4YPG4_STRPU/114-532; L-fucokinase  ali follow..  13  1.....AGGYSQRL-PSASLLGKIFTAV-----------------------------------------------------------PYGRPIYQMLELILAMYIDLPAHMPSGGIFLACSDVIILYDCTVGVEWSFDK-PGITAFGHPAPIAVGTTHGVFLYKDTPNVCSFLHKRSEDVLREKGVLLPQPCQQTLGISEDHVLVDSGYFMDGETAKKMIKSPLSCEIDSHGDFLHGLGNCGN------NSYINDMSNVSSKTDKLLSMRQE 213
3 -14.500PF01704.18; E6ZRZ1_SPORE/65-474; UTP--glucose-1-phosphate uridylyltransferase  ali follow..  13  54.VLKLNGGLGTTMG---CTGPKSVIEVREGMTFLDLSVRQIENVNVPFILMNSFNTDDDTARVIQKYANHNVEILTFNQSRYPRVNKESL-YPPGHGDAMNNSLDRLIAAGKEYLFVSNVDNLGADVDLNIYQHMIDTQAEFISEVTDKTKADVKGGTLIDYEGTIRLLEIAQVPSE-------------HVEDFKSIKKFKIFNTNNLWLNLRAVKRVLENE................................................ 283
4 -10.400PF02348.19; NEUA_MOUSE/44-298; Cytidylyltransferase  ali follow..  15  1AALVLARG-GSKGIP------KNIKRLAGVP-LIGWVLRAALDAGFQSVWVSTD--HDEIEN---------VAKQFGAQVHRRSSETSKDS--STSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQ---FRWSEIQKGVREVTEPLNLNPAKRP--------------RRQDWDGELYENGSFYFAKRHLIEM----------QGGKMAYYEMRAEHSV---------DIDVDIDWPIAEQRVLRF 219
5 -10.400PF12804.7; Q5FTR9_GLUOX/6-165; MobA-like NTP transferase domain  ali follow..  15  1.GLILAGGASRRM-----GTDKAALDYHGKP-QLQAAFEVLTPV-VEQCFVSVR--PGQTSDPLRSSFP----------------QIVDTVDVDGPAAGLLSA---HRAYPDVAWLVLACDLMLDRGTLDTLIAARDGEHVAVSYRSEHDGLPEPLCAIWEPEALERLEKQVAG................................................................................................. 146
6 -8.390PF01128.19; ISPD_ECOLI/8-229; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase  ali follow..  13  3.AVVPAAGFGRRMQ---TECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDE----------------RADSVLAGLKAAGD--AQWVLVHDAPCLHQDDLARLLALSETSGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQ............................................................................................... 160
7 -7.380PF08955.10; X5A2E1_9BACL/158-235; BofC C-terminal domain  ali follow..  15  8..........................................................................................................................................................KKEAYIGIDHEGNLTLFKGPPKREEALKTFFQIDIGTMKSSLPEKVWKQLQGGIRVQDIDEYNSVLSTFSD.............................................. 78
8 -6.790PF08472.10; C6T8I9_SOYBN/262-393; Sucrose-6-phosphate phosphohydrolase C-terminal  ali follow..  33.........................................................................................ERWRRGEVENPEQYIQKLKSVFHSTGNFVSGIDQPMHQTIDTLAKAFGDKTGKDFRV------WVDCISLAEVSLGSWLVKFDKWELSGNESRGCSTKALMNAK.............................................................................. 132
9 -6.210PF01150.17; MIG23_CAEEL/35-482; GDA1/CD39 (nucleoside phosphatase) family  ali follow..  11  11.GVICAGSTGTRLFVYNWISTSDSLIQIEPVIYDNKPVMKKISPGLSTFGTKPAQAAEYLRPLM----------ELAERHIPEEKRPYTPVFIFATAG-----MRLIPDEQKEAVLIIEGEGIYSWIAVNYALGKFNKTATLDFPGTSPAHARQKTVGMIDMGGASAQIAFELPDTDSFSSINVENINLGCREDDSLFKVTTFLGYGVNEGIRKYEHMLLSKLKDQNGIQDDCMPLNLHKTVTLENGENFVRRGTGNWNTCSNEVKKLLNP 296
10 -6.120PF09488.10; T0KR97_COLGC/5-389; Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth)  ali follow..  75..IIFVSNSSRGEHGGVDNYRIEVSLLKNFCRLTGRQAIAIHQKDPAAAEAFEAAGAPDLID----------------------PNTVIPTIRNGKGEGMLMGMTLAAMQGCEYLGFIDADNYI---CKSFASGLYLAQSADAMVRISWGSKPKYRDNEWVFERRGRCSEVVNGWLNRLLEEIYRETGSESTYTNIIET----GNAGEHAMTMSLAAKM----EMAGGFAVEP...................................... 279

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24