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Query: PF00510.18; COX3_NEUCR/12-269; Cytochrome c oxidase subunit III, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst HPFHLVSPSPWPLNTSVCLLNLTTTGALSMHNFNNIHYLYYIALIGLVSAMFLWFRDIISEGTFLGDHTLAVQRGLNLGIILFIVSEALFFLAIFWAFFHSALTPTVELGAQWPPIGIEPVNPFELPLLNTVILLSSGATITYAHHALIKGEREGALYGSIATILLAIIFTGFQGVEYSVSSFTISDGAFGTCFFFSTGFHGIHVIIGTIFLAVALWRIFAYHLTDNHHVGFEGGILYWHFVDVVWLFLYISVYYWGSLast
1 -113.000PF00510.18; COX3_NEUCR/12-269; Cytochrome c oxidase subunit III  ali  100  1HPFHLVSPSPWPLNTSVCLLNLTTTGALSMHNFNNIHYLYYIALIGLVSAMFLWFRDIISEGTFLGDHTLAVQRGLNLGIILFIVSEALFFLAIFWAFFHSALTPTVELGAQWPPIGIEPVNPFELPLLNTVILLSSGATITYAHHALIKGEREGALYGSIATILLAIIFTGFQGVEYSVSSFTISDGAFGTCFFFSTGFHGIHVIIGTIFLAVALWRIFAYHLTDNHHVGFEGGILYWHFVDVVWLFLYISVYYWGS 258
2 -18.000PF04238.12; D2R8P5_PIRSD/10-142; Protein of unknown function (DUF420 topsan)  ali follow..  1.............................................................................................................................LPHINASLNVLATLLLVLGFVLIKRRQEVAHKNVMLACFGVSAIFLISYLTYHFNIEGGSKKFPTYPTYYLILLTHVVLAAAVPFLAVITIWLGLTNRRAAHLRLAKWTFPI-WLYVSITGVVVYVML..... 133
3 -10.700PF05297.11; LMP1_EBVB9/1-386; Herpesvirus latent membrane protein 1 (LMP1)  ali follow..  22  3HDLERGPPGP-PLSSSLG-----------------------LALLLLLLALLFWLYIVMSDWT---------------GALLVLYSFALMLIIIILIIFIFRRD-----------------LLCPLGALCILLLMITLLLIAL-------NLHGQALFLGIVLFIFGCLLVLGIWIYLLEMLWRLGATIWQLLAFFLAFF------LDLILLIIALYLQQN----------------WW-LVDLLWLLLFLAI..... 180
4 -8.090PF11045.8; Q6D3R2_PECAS/3-119; Putative inner membrane protein of Enterobacteriaceae  ali follow..  11  9...............................................................................................................................................................TCCFLLFTVVFLSQKIEVSEVAVNDGLRGSPGMLLFLLPGM--FGALAAMPVCLLLLHLWNTPMRSFWQELAYVMSAVFWCVLGAMGVLCLRSLY.... 116
5 -8.010PF17534.2; Y028_MYCGE/1-186; Family of unknown function (DUF5453 topsan)  ali follow..  15  8..........................................................................................................................HYNVFLANLVLVFGFALNILVAKQSLN--NTTPQFRFLFVTPFLGVVIGAVLYFDYPYKKFHFQKK-WAIVYLSGVIVFFLNVLIGVVLLVVMV------NYITNQILEREYERLFTNSLPYLWSTTGTSIVL... 139
6 -7.900PF02990.16; C4JNI4_UNCRE/63-607; Endomembrane protein 70  ali follow..  12  300.............LFMMTGLTVLFALFGLLSPSNRGFLGTAILIIYTFLGFIGGYVASRTYKSFGGEAWKRL----------IIATPLILPAIIFSVFFFLNFIL-----------VKGASGAVPFTTMIVIVLIWFVISVPLSVGGSWIGFKQPALEGPTKTNQI---GSLRLVPSTLIAGFFPFAAIFVELYFIMNSLGKIYYMFGFLFLCYGLMIMMSAMTT---LLCAEDYRWQWRSF--GYVFINALVFWA.. 537
7 -7.520PF03839.16; U3IKN1_ANAPL/87-308; Translocation protein Sec62  ali follow..  11  131..........WPAEMRVGVYYLSVGAGCFV----ASILLLAVDTARCILFLIIW-----------------LITGGRHHFWFLLTADVGFIDSFRPLY................................................................................................................................................................ 199
8 -7.120PF00264.20; A2QUC2_ASPNC/107-337; Common central domain of tyrosinase  ali follow..  17  136.................................................................................................................................................RCLSRDVNPSVSRMSNSFRNTTKLILSYDTIDWFQGVMQADQRFTDPTAPFSYGVHGGHLTVG-------------SVLADIDTSPAEPMFWLHHQIDRVW............ 225
9 -7.050PF11877.8; Q8Y5L3_LISMO/9-120; Protein of unknown function (DUF3397 topsan)  ali follow..  12  1..................................................................................................................................TAIIIILPVVVFILTMFFSSFKLKKSQRRIMLAADLSTIFLII--------------AVHFFMIVLFNRSFLLYILLFLFILGIVIVVTAAKKEGEIQFRKILRG--YWRLCFFIFALLYVALYLYG. 111
10 -6.790PF17525.2; W9TQ91_9PSED/7-112; Family of unknown function (DUF5447 topsan)  ali follow..  12.....................................................................................................................................................................CSVCWSRREMAKPDPSRFTPCALCRPAYARPIRTLQ-MGCVGGIWKALLSEWTV-EPAFICEKHTPPERPAKWWSVIPTPYVPIHEPFELVG. 106

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.