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Query: PF00513.18; VL2_BPV3/5-514; Late Protein L2, from PfamA32U

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ARRKRASEDDLSRGCRAGQDCPIDIKNKYEQNTLADRILKWVSSFLYFGTLGISSGKGTGGATGYTPIGGGGVRGGKGANVVRPTVLVDALGPTGVPIDPVTPDEALVPLLESSGGSTTLDVPPGGEIEVIAEVHPPPAAGDPEITIGHPEEPPILEVIPETHPTTRVRTTVSKHDNPAFTAYVASAQLPGETSASDNVFILHGFNGEYVGPAQTGEDTVFEEIELENFGVPESPPSSSTPNTSFRNILNKFQRRLYNRRLVQQVKITDRTFLTKPSKLVSWEFDNPTYTDDSLSLIFQQDVDEVSAAPMAEFQDIVTLSRPVVYEREGLVRVSRLGQRGTIRTRSGLRIGGHVHYYTDISPIRPVEDIEMRTLGEVSGDSVIMQPLAESTFVDSGDVLNEGNIEFPDSTLEDDYNEDFSRARLEITTSARSRTSIVTVQEGIPPGSVKLFINDAETIVTPHGPESNDTDRYQPFIPVTPAATPDIIITFEEGTATFFLHPSLLKRHKHKLast
1 -186.000PF00513.18; VL2_BPV3/5-514; Late Protein L2  ali  100  1ARRKRASEDDLSRGCRAGQDCPIDIKNKYEQNTLADRILKWVSSFLYFGTLGISSGKGTGGATGYTPIGGGGVRGGKGANVVRPTVLVDALGPTGVPIDPVTPDEALVPLLESSGGSTTLDVPPGGEIEVIAEVHPPPAAGDPEITIGHPEEPPILEVIPETHPTTRVRTTVSKHDNPAFTAYVASAQLPGETSASDNVFILHGFNGEYVGPAQTGEDTVFEEIELENFGVPESPPSSSTPNTSFRNILNKFQRRLYNRRLVQQVKITDRTFLTKPSKLVSWEFDNPTYTDDSLSLIFQQDVDEVSAAPMAEFQDIVTLSRPVVYEREGLVRVSRLGQRGTIRTRSGLRIGGHVHYYTDISPIRPVEDIEMRTLGEVSGDSVIMQPLAESTFVDSGDVLNEGNIEFPDSTLEDDYNEDFSRARLEITTSARSRTSIVTVQEGIPPGSVKLFINDAETIVTPHGPESNDTDRYQPFIPVTPAATPDIIITFEEGTATFFLHPSLLKRHKHK 510
2 -10.800PF03153.13; U4LM67_PYROM/9-393; Transcription factor IIA, alpha/beta subunit  ali follow..  8  1..........VYSSI-------EEVINSFEEAGINASTLDWRNKLSGLKIAQFPWDPAPAPEPAPLAIGTAVSQQQRAQQQQHVHHAQHMMHQQQQMPQQGQHMVVPKQEPYTQLGNGGVKIKSEPGMEQSGVYTMPVAANLAGNPTHDPTRPQSGLVLPAMNAGPPPQPQPQRTQQTGMQQHDGADDEVISIEGFGSLSREQADNVLLSRINQAERASAKATEDLFLALQNLKTTDPSPKFKVKGKRKSKARRVHRDPYDEALDPNSSYPYPATVEETFPSAAQAPRIPQGDATADSDDENDEDAINSDLDDPEDDEIDNDDEDEVPQRMKVQRTKNKWKCVLKDGLTINGREYVFHKANG-----EYE............................................................................................................................................ 384
3 -9.410PF15961.5; ZN839_HUMAN/7-805; Domain of unknown function (DUF4764 topsan)  ali follow..  11  341ASPSKARLKEFLQQCKVEKDHLPAIYKEFEEKMCQDYLLEINNDKV---SLGITEFDMDGEQLEGASSEKREREAAEEGLASVKRPRREALSNDTTESLAANSRGREKPRPLHALAAGFSPPVNVTVSPRSEESHTTTVSGGNGSVFQAGPQLQALANLEARRGSIGAALSSRDVSGLPVYAQSGEPRRLTQAQVAAFPGENALEHSSDQDTWDSLRSPGFCSPLSSGGGAESLPPGGPGHAEAGHLGKVCDFHLN-AAPPLEKILSVDSVAVDCAYRTVPKPGPQPGPHGSLLTE--QRELESVVAVGEAMAFEISNGSHELLSQGQKQI----------IQTSDGLILSPP-------TIVSQEEDIVT--VTDAEG................................................................................................................................... 798
4 -9.080PF15324.6; H9GLI0_ANOCA/127-1404; Hedgehog signalling target  ali follow..  12  903SEHSEAVSSDIVEAAGAAG--PVDMIRRFVNEALAETV------ATVLGDRENHRAAPVTVVPSAAALLPEKETLLPTPLATPEATPPQSPPPALNEQFPVKTPTSSPSVTEMDGEQPQTGPEAAAASVVYTPVATPVATPPKIATPTPPVSERAPNREAMEKPPPPNPWEDAELPLEEEKPSPQSEEGAYPSRAVIMSVAKHEEPDSLVLPASVPIAPQDLQSQEPRARSPSVQSPSSGPSTEESLTTTETETTD---------PISEGEVLYSYGQLLA-SLASSLHDAQEMDYDPPSEGQVLRRPHKGYHRDFSKLNQAPLASQEGELSE---GQRPRL-TRTAESI................................................................................................................................................................ 1275
5 -8.580PF09786.9; B9HQ86_POPTR/12-670; Cytochrome B561, N terminal  ali follow..  8  20.RPSKASAFSLLSTISRENGLIEKMSFRIFSQEVA-KAAQAVVGLLFIGSVFSIFKAISLYRVKIAGVRITSPSKDARDQPQLTNRQLGLIGVKPKVEPVVSESSKKPPKSNPTSSASNVLVPIHQLITCSHQKSRVGSDKSNAGSGNKMASFSTPSKSRNSPSFYLVPGANSPLPSVQSSPAIDSAVSTPWSDKRASYTKEIRTEEQLEQFLAEVDEKISESAGKYATPPPTIGGFGMASPNTVASPANTPGVTRSTPLRPVRMSPGSQKFTTPPKI........................................................................................................................................................................................................................................ 310
6 -8.570PF15895.5; CXX1_HUMAN/1-209; CAAX box cerebral protein 1  ali follow..  13  1...............................................MGG-----GRGLLGRETLGP-GGGCSGEGPLCYWPPPGSPPAPSLRASLPLEPPRCPLNSAPGSCCRPWASLWSEPPPSPSSQPAPPMYIWTLSCAPAASWAPVTHWTDHPLPPLPSPLLPTRLPDDYIILPTDLRCHSHRHPSHPTDRLLLLVIWTHLGGIWAGHSPWTVIQTAGRPPRDLSPSARPISSPPPETS.......................................................................................................................................................................................................................................................................... 205
7 -7.940PF03276.14; GAG_SFVCP/9-622; Spumavirus gag protein  ali follow..  10  84.......................ELQLAFQDLDLPEGPLRFGP---------LANGHGDPYSRSYRPLYEVETRALRRQLAERSSIGQGGISPGASHSRPPVSSFSGLPSLPAIPGIHTRAPSPPRATSTPGNIPRSLGDDNMPSSSFAGPSQPRVSFHPGNPFAEAEGHRPRSQSRER-RRDIPSAPVISAPVPSAPPMIQYIPVPPPPPVGAVIPIQHIRSVTGEPPRNPREIPIWLGRNAPAIDGVFPTTTPDLRCRIINALLGGNLGLSLTPGDCITWD----------------------------------SAVATLFIRTYGQYPLHQLGN-KGIADQEGVATAYTLGMMLSIRGYLPGQAV............................................................................................................................................. 432
8 -7.660PF06583.12; G3Q2S1_GASAC/1097-1393; Neogenin C-terminus  ali follow..  10  3.....................PPDL---IHH----EEMMK-----------NMEKAPSVAPSGHDSPLQSCQDLPQVAHSQSKSSHSGADGDEASSSISTLDRSLAGRRGTRGKMMIPMDSQPSNTPVVSAIPVPAMDSSQYPGILPSPSCGFTHNKFSLRPMPFPSLTVDRGYTPGYSSSGGTGLAVQKVTSHLTSYQKHSRLISRPPATVIPTIVILLPHKILIFTDYLITPIKSEIYPRDFCQVEPAAS----LSKPQVKTASLGQAGKARSPLLPVS----VPTAPDVSEEGGTKPAEDSAANIYEQD-----DLSE----------QMASL---------EGL--------MKQLNAITGS................................................................................................................................................ 297
9 -7.370PF00276.20; G8R2K4_OWEHD/3-92; Ribosomal protein L23  ali follow..  17  4.............................................................................................................................................................................................................................................................................................RPVITEKATADSEDRNRFAFVVDKKANKVEIKKAVEELYGVNIEKVRTMLVGKKKSRFTKNGVVSGSTGMYKKAIVEVRSGETIDL........................................................................................................................................... 90
10 -7.200PF00997.18; E2QXF8_CANLF/23-184; Kappa casein  ali follow..  13  25................................................................YIPIHYVLNSFSHYEPNYYPHRPAEPINHQYVPYPFYAKPAVAVRTHAQIPQWQVLPNAYPPTMMHRPQLHPSFIAIPPKKIQDKTSIPTIATAEATPIPLTEPKVNTAVTSDASSEFTITSTPETTTVPVTSPV....................................................................................................................................................................................................................................................................................................................... 162
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bossy-Wetzel E, Barsoum MJ, Godzik A., Schwarzenbacher R, Lipton SA. Mitochondrial fission in apoptosis, neurodegeneration and aging. Curr Opin Cell Biol. 2003 Dec;15(6):706-16. Review.